Gene detail

Detailed information of evm.model.HiC_scaffold_210.7 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_210:37191...54769
NR annotation: CAB3982751.1, Transposon Tf2-9 poly [Paramuricea clavata]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_210.7

ATGGCGACCTCTGCTGGCCTAGCACCTATGCCTCCGTTCGATCCAGACACTGCTCTCGGAGCAGATGTATCTTGTCGTTGGAAAGTCTGGTTAGAGGACTTCGAAACATTTCTAGTTGCGAGCGACATCAATGATGATAAAAGGAAAAGAGCCTTACTTTTATACCAAGCGGACAACACTGGAGAGGATTACAAGTCTGCTTGTGAAAAACTGACTGCCCATTTTCAACCACAGAAAAACCGCATTTTCGAAGTTTATACATTTCGTCAGGCCATACAGGGCTCAGGTGAAAGTATCGATCAGTTTCACACACGTCTGCGTTCTCTAGCTCAAAACTGTGAGTTTCATGACCCTGATTTTGAGATACAAATGCAAATAGTGATTGGTGGAAAGTCAAGTCGACTTCGCAAACTTGCATTGCGAGATCCGGATTTCAAACTTAGTGATATGCTCATTGCAGGAAGACGGGAGGAATCCAGCTCTTTCCAGGCAGCACAAATTGAACACCGCATTGAACAAAACTCTTTGCATTCAGAAAAGCtaaacaaaatttcatcaaacaaatttGAAAGCCGTCCACGaccaaaacattgttttaactGTGGAGGAATACCCCATACATCTGTTTGCCCAGCAAAAGGAAAAACTTGCAAAGCCTGTGGGAAAGATAATCATTTTGCCAAATATTGCCGCTCAAAACAAAAGTCATTTCAGCCCATTAACCCACTGGAAACTGCTCCAGACCAAGGACAGCCTTCAGACTCTGAGTCATCTTCTGACAGTCACTACTGCTATTCAACTGAACACCAAAATCCGCCTACAACTGTGAAAGCCTTTGCATTTAACAGCTCAGAACCTGTAAAACTTGCAGGAAAATTTGAAACAGTTTTGGAAACACAAAAGCGTTATGCTGTTGCTACTGTCTATGTCACACAAGGAAAAGGGGGATGCCTGCTAAGTGCCACTTCAGCACAAGAATTAGGCCTTGTCACATTACATTTAAATAACATATCTACCCATCAGCCTAATTTAGCTATTGATGATATTCCTATACAGCGTCTCATAGAGAAGCATACGCAACTATTTGAAGGACTTGGGAAACTAAAAGGAAAGCAAATTGAACTAGTCATTGATGAAAATGTAACTCCAGTAATGCAACCATTACGACGAATTCCTTTTCATGCAAGGAAAAAGCTAGAAGATGCACTTGCTGAATTAATTGCAAAGGATATTATCGAAAAGGTCCCGGACAATGATAAAGCTGAATGGGTATCTCCAGTTGTTCTTGTGCCTAAGCCTAATGACACTGTTCGGCTATGCATTGATATGAGGGTTGCAAACCAAGCAATCAAGCGCACCAGACATCCTATTCCTACAAGACAAGACATTGCTCTTTCTTTGAATGGTGCTacagttttctcaaaacttgaCTTAAATGAAGCATATCACCAGCTTGAGTTGAGCTCACCCTCGCGTCACATCACTACCTTCAACACTCACATTGGCTTGTATAGATATAAACGGCTCAATTATGGGACAAATGCAGCAGCTGAATTGTTTCAACATGCATTAACGGAGATATATTCTAAAGATGGTGTCCAAGCAGACCCAGACAAGATCAATGCCTTTCTTAATACACCAACACCAAACACAGTGAGTGAAGTCAGAAGTTTACTTGGTATGGCTAACTATTGTTCACAATTCATACCTAATTTTGCTACCATTACTGAGCCTTTACGACAACTTACTAAAAAAGGGACAGCTTTTCTATGGAATGGTTCACACCAACAAGCCTATGACCAATTAAAAGCTGCATTAACAAACAGTCCAGTAATGAGTTACTTTGACACCAGCAAAGATACCCTTCTTTATGTTGATGCCAGTCCAGTTGGTATCTCCGCAATCTTAGCACAAAGAGATCCTGATACCTTGGGTGAACATGTGGTGTGTTATGGAAGCCGTGCTCTCACAGATGTTGAAAAGAGATATTCTCAAACAGAAAAAGAAGGACTAGCTATTGTATGGGGTATTGAACACTTTCATTTATACTTGTTTGGTAAGTCATTTACATTGTTTACTGATCATCGTGCTTTGGAGCTTATTTATAACAATCCTACTTCTAAGCCACCCGCTCGGATTGAGCGATGGCTATTGAGACTACAGCAATATCAATTTCATGTGACCTATAAGCCAGGCTCAAGCAACCCAGCTGATTTCATGTCTCGTCATCCTGTTCAGACCTTGTCAGAGAAAGTTAATATAGCAGATGAATATGTGAACGCTATTACTAGCTATGCATTACCAAATCCACAATACATCTCTTTAAAAGAGCTGCAAGATGCCACAAATGATGATGCACATCTACAAGCTGTACGCAATGCTTTAAAAACAGATCTCTGGAATACGGATCTCACAAAGGCTTTTGGCCAAATAAGACATGAAATTACTGATGACCATAGTAGCCAGCTTCTACTTAGAGGCACAAGAATAATTATTCCTACTTCTCTTCAAAAACGCATCGTGAAATTAAGCCACCTGGGACATCCTGGAGTTGCAAAAACAAAAGCGTTACTTCGTGAACACGTGTGGTTCCCACACATGGATGCTGCAGTTGAAGAAGAAGTTCGAAATTGTCTGTCCTGCCAATCTATGACTAGAGGAAATTCTCCTGAACCGCTACAATCTAGACAGATGCCAGATGGCCCATGGCAAACTGTTCATGTTGATTTTTTTGGGCCATTGCCAAACAATATCTATTGCCTTGTTTTTATTGATAGTTACTCCAGATACCCAGAAGTTGAGTTCGTCAGCAGCACTTCCGCCAGAGCTGTTATCCCTGTGTTTGATTCAATATTTGCTCGACATGGACTACCTTATAAAATTGTGTCTGATAATGGACCTCCTTTTCAAAGTGAAGAGCTACGCCGGTATATGGGATTACTGGATATCAAACACGAACACTCGACTCCATTATGGCCTCAGGGAAATTCAGATGTAGAGAGTTTCATGCGACCTTTGAAAAAAGCACTAACTATTGCCAACATAGAACGCCGTCCAATGCAACAGGAACTCTCAAAATTCTTGTTAAGCTACAGAAACAGCCCTCACTCTACAACTGGTGTTCCACCATCTCAACTACTATTTAACAGAAAAATTCGAGGATCGCTACCTCAGCTCAATCCAGGAGCAAAAGTGATTCACAAACATAAACTGGCACAGGAAGCAAACCAGAGAGAGAAAGAGAAGAGTCGAACGTAtgcaaacagaagaagaaacGTGAAGTCAAGTAATATTAACATCGGTGACACAGTGATGGTGAAGGAAACTGAACGCAGAAAGTTAACACCAAAGTTTAAGATAATTCCATACATTGTTATTAGAAAGGATGGCACAAAGATAACTGCAGAAAATGAACACCATACTATCACGAGGAACTCGTCATTCTTTAAGAAAATACCAAACCGAAAATATGAAGacatcgatgatgatgatgatgaatataagATTGTGAGAAATATGGAGAAAAACGGAGATATTCATCCCCTCAGCCTTGTTTTGAAGTTGAGGTCCAAGAATATGAAtcacaaacaaaagaagaacaaagaacacAGAGGATCAAGGAACGAAAAGTTTCGGTGCATTGGAGGAACAACTTGTGTCTTGGAAGAAATGGCGGCGTTCTGgagcaaaatttcttttctgtGGCTGATTTTCACGGGCTACTTTGCCTTGCTTTTGGTTTTGAATATAATTGTTGATGTAGAATGTATAGGAGAGGTTATTTTTGCTGTCAATGCAGGCGGCTCATCACACACAGATCTGAATGGCGTTCATTATCAGGCTGATAAATTGTCGGCTGGAGTTGCTTCAGATTTTGGCAAAGGAATTCAGGTTGCTCGGGTTGCACCCCCAGACCAGATTCTTTATCAGACTGAAAGATATCATGTCGCAGATTTCGGGTACAACATCCCAATCAAACAAGAAGGAGATTTTGTTCTTGTTCTCAAATTTAGTGAAGTTTATTTCAGGGGATCAAAACTAAAGGTGTTTGATGTTCGTATAAATCAGTTTATTGTTGTAAAAGATTTGGATATTTATGACAAAGTTGGATATGGTGTAGCACATGATGAGTATGTTCCATTCACTATAAGAAAAGGAACACTCATTGTTGGTAACCAAAAAGCCCCATTTCCTGGACAGCTGCATGTTGAGTTTGCTAAGACTTATTATGACAATCCAAAAGTCAATGCACTAGCAGTTTTTAAAGGAACAATTGATGATATCCCAAAGCTACCTCCGTTGAATATGCCTGAAGATAAAACAGATGAGAAAGAAGAACCGGAAGAAATACAggaaaaaactgaaaagaaaagaaaaacatcaGGACCCAAAACGCCAAATCCATATGAGCTTGACGACTCAAGTTTGCTATATCCCATCTTGATAGCTATAGGCATATTTCTTCCAACTCTTTTATGTTTGTGTAAGTTATGA

Transcript

evm.model.HiC_scaffold_210.7

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6ZQI3	Malectin OS=Mus musculus OX=10090 GN=Mlec PE=1 SV=2
Q5FVQ4	Malectin OS=Rattus norvegicus OX=10116 GN=Mlec PE=2 SV=1
Q14165	Malectin OS=Homo sapiens OX=9606 GN=MLEC PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000003 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00665 all species →	rve	Integrase core domain	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF11721 all species →	Malectin	Malectin domain	Domain	Interproscan
PF17921 all species →	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF17919 all species →	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR021720 all species →	Domain	Malectin domain	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR041588 all species →	Domain	Integrase zinc-binding domain	Interproscan
IPR041577 all species →	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984 all species →	PROTEIN CBG26694	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_210.7.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.