Gene detail

Detailed information of evm.model.HiC_scaffold_210.9 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_210:104672...122380
NR annotation: XP_031551488.1, RING finger protein 10-like [Actinia tenebrosa]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_210.9

ATGGACAAAAAAGTGATGCAACAGAAAAACATGGTGCTGCAGAAGAAAAATGGGGGTCATGATGGTAATTtgtatagaatttcaaactacAGTGTATTGATGTGTGTAAATGGATGTAGACGTagcagtgaaggtgaaggtgaagTCAAGCGATACTCTCAGAAGTCGTCAAAGAAGACAGAGACAAAACCTAGTAGCTGGTCTCCTAGTCTAAAACATCAGTTAGCTGATAATCGATATCAGGGAAGGACATCAAGAGGAAAAGCAAGACAGTTCCAGGAAGCTGGAGTAGCAAAGGGGCCTCAAATAGCATACGATGGTGACGATTTGAACAAAACTGAGTCAGATTGTGTTGATGATGGGCTTGAATACAGAAAACTTCTGAATTTTAAGTATGAACCACCTACCAGATTTCATGTTGGATCTGCTGGAAGAAAATATGGTAGATCTTGGAACTCTGCAAGAAGTCCTGTTTATAACAAAGAGACCTATCTCCAGGCCAACTGTCAATTTGTGGTTAAAGAAAAAGGAAACTATCGCATCCATGTTGCTGATCCTGATGTTCTTGTGGAATGGGATTTGATTGAGCAAGTGCGCATCTTCAGTCATGAAACAATGTCCTGTCCTATTTGCCTTGACACACCAATCGCAGCTAAGATAACTAAATGTGGACATGTTTATTGTTGGTCTTGCATTCTTCACTATCTTCAGTTGAGTGATAAACCTTGGAGGAAATGCCCTATTTGCTATGAAGCAATTTCGCCTGCTGATCTCAAGAGTGTAGTTACAACATGTACCCAAAAGTTTGGCAAAGGCGAACAGATGAAAGTGCGTTTGATGAAAAGAAAGAAGGGTTCTGTGCTTTCTTGGCCAGTTTCCTGTTGCGAAGACACTGAGGAGGAGAATTTTAAGCAGTGGAAAGGAGAATCAGATGCATCACATTCAAAGCTTGTCACATCCGATCCACAAACTGTGTATAATAACATCATCATGCGTGAAATGAATGAACTTGAAGAACAATTGAGGTGGGCCAGAACCGAGAAGTCTGGTGAAGAATGCTTTATTGAGAGTGCTTTGGTAACATTGAAGGAAAAAGAACGAGAAGCCCTACAAGATATTCGCAGATACGAGGCTACAGCCTTTGACAAGACACAAAaaaaaGATGTACCGAGGGAAACACCAGTCGCTGCATTTTCCATAGAAGAAGTTGCCAAAAAGATATCTTCATTGTCAATTGATGAACCGGCTTTTTCTGATGACGAAATTGAGGTCGGTGCAGAGGGCATTGAAAGTGCTGCTGAGTTACTGGTTGATGCAACCCCTGAAGTTATTGAACCGGCGTCTGCCTGCAGCCAAAATGAGATGATCAATCAAGACAAACAAGTCAAGATCAATGACTCAGATTATTTCTATTTCTACCAGGCCGAAGATGGACAGAGCATATTTTTACATCCTCTAAATATCCGATGTCTTATTCGTGAGTATGGTAGTCTCGGAGAATGTCCAGAAATGATTTCTGCGCAGATAATTGACATTGAACACTACACAATGAACAAGgaTTTGAGGAAGCGTTATCGATTTCTGAGCCACTTACCAGTTACATGTGGTTTCTCTTTTTGTGAACTGATGCTGCGACCACCGATTCTGTCTCGAGAAACGATATCAGAGTTCTCACAAGAATTTTACAACCGAAAAATGCAGcgacaaaaaaagaaaagagaagaaaggaAACAAGATCAGAGAATGGAAAGCAGAAAAACCATGGACATGTTTGGTAGAGAAATCCAAAGACCTGTGGATGAAATTTCTTGGGATTTAGAAAGTAACCAAGAGTTTCCAAGTCAATCTGGTGAATCTCTCTCTGATTACCCTTCATTGGGTATATCATCAGTCAGTCCTAATTCATGGGGTTCGTCATCTTTTGCACAAGCACTGCAGAACAACAGCCAGCCAGCTGTACCAATTAAAATGCCAATTGGCAAACCAAAACTGGCAGATAATACAGTTAGAGAGTCTGGAACGAATTTGAATTCTGATGGTGAAGTTGATGAGGATTATGTTCCTGTTCCATCGTTTTCAAAAGCTTTTAGCGATGCCTTGAGTGCATCATGGAGAACCGTtgattcaaaagaagaagaagactcAACGCGTATGCCAAACaaaggaaacaaaaagaaacaaaaagaaaaaaagcttCTTTTCTCAACTGATTTCAAACCGATCTTTGAACGGATAATGGGTAATCAAATAAATCAATATATGGAAGATAAATTCTCCCCGTTGCTCTGCGGCTTTCGAAAGGGCTATGGGACCCAACATGCTCTGATAAGATTAACTGAAAATCTTAAGAGAAATTTGGACCAGAAGTTCAAAAACGGTTTGGTTCTcatggacctttcaaaagctTTCGACTGCCTTCCTCATGAGCTACTTATCGCTAAGCTCGATGCTTATGGTTTTGATATGAGTGCTCTGAAATTGGTTAAAAGTTATCTACAGGAGCGAAAACAGAGagtgaaaataaattcaaattatagtGAATGGACCAGGATCAAACAAGGGGTACCACAAGGCTCTGTACTTGGCCCTCTTTTCTTTAATATATTCATAAACGACATATTCCTCTTTCTTGAACATAGTGAGTTATGCAACTATGCCGATGATAACACAATCTGGGTTAAAGGAAGGGACACTAATTTAATTACAAATACCTTGAGTAATGAAATAAGAGAACTGAACAAATGGTTTAAAAATAACTCGATGGTTTTAAATGGGGACAAATGTAAACTAATGATTATTGAAAGTATAAATGATAGACCTGAGAAAgcagaaataaagataaatgacAATCCTGTAGAAGAAGTAAATGAAGCTAAACTACTAGGTGTCACCTTAGATAAGCAACTTTCTTTTGATAAACATATTAAATCAATCTGCAAAAATGCTGGTAAAAAACTCAGTGCTTTAGCCAGTAGACTTGGCATTGATTAG

Transcript

evm.model.HiC_scaffold_210.9

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q08E13	E3 ubiquitin-protein ligase RNF10 OS=Bos taurus OX=9913 GN=RNF10 PE=2 SV=1
Q8N5U6	E3 ubiquitin-protein ligase RNF10 OS=Homo sapiens OX=9606 GN=RNF10 PE=1 SV=2
Q3UIW5	E3 ubiquitin-protein ligase RNF10 OS=Mus musculus OX=10090 GN=Rnf10 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005851 (this species only)
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00097 all species →	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR018957 all species →	Domain	Zinc finger, C3HC4 RING-type	Interproscan
IPR039739 all species →	Family	RING-finger protein MAG2/RNF10	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12983 all species →	RING FINGER 10 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0000976 all species →	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_210.9.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.