Detailed information of evm.model.HiC_scaffold_216.4 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_216:57675...64539
NR annotation: XP_002112870.1, hypothetical protein TRIADDRAFT_25751, partial [Trichoplax adhaerens]
Species abbreviation CQUIN · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q55FN72-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Dictyostelium discoideum OX=44689 GN=bkdB PE=3 SV=1
Q6P3A82-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Mus musculus OX=10090 GN=Bckdhb PE=1 SV=2
P357382-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Rattus norvegicus OX=10116 GN=Bckdhb PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004764 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02779
all species →		Transket_pyrTransketolase, pyrimidine binding domainDomainInterproscan
PF02780
all species →		Transketolase_CTransketolase, C-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR009014
all species →		Homologous_superfamilyTransketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain IIInterproscan
IPR005475
all species →		DomainTransketolase-like, pyrimidine-binding domainInterproscan
IPR033248
all species →		DomainTransketolase, C-terminal domainInterproscan
IPR029061
all species →		Homologous_superfamilyThiamin diphosphate-binding foldInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR42980
all species →		2-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003824
all species →		Molecular Functioncatalytic activityInterproscan
GO:0005947
all species →		Cellular Componentobsolete mitochondrial alpha-ketoglutarate dehydrogenase complexInterproscan
GO:0007584
all species →		Biological Processresponse to nutrientInterproscan
GO:0009083
all species →		Biological Processbranched-chain amino acid catabolic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.HiC_scaffold_216.4.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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