Gene detail

Detailed information of evm.model.HiC_scaffold_22.130 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_22:1904733...1940883
NR annotation: XP_029201060.2, ATPase family AAA domain-containing protein 3-like [Acropora millepora]
Species abbreviation CQUIN · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_22.130

ATGTGTAGAAATCTTCACATTAATGGATATTTCAATTTTAGGTCTAACCAAAAGCTTGTCACAACCCAGAAGCAGGTTGATGAGGTTGTTGGAATAATGAGGCAAAACATGGACAAAGTACTTGAAAGAGATGCAAAGCTTTCAGATCTTGACAACAGGGCTGAGTCATTGCAAGCTGGAGCCTCTCAATTTGAATCAAATGCTGGTAAACTGAAGAGGAAAATGTGGTGGCAAAACTGTAAAATGTGGGTCATCTTGATTGTGGTGATTCTTATTATCATTGCCATCATTGTCAGTGGTGGCTCTGAACCTCCATATATACCTCCAATGCCCCCATATGGAGGGGGAGGAGGTGTTCCTGGAGGTGATGGATCTGGAGATAAGGGAAAGAAAAGTGAAGGTGGTAGTGATGAAATGACACCTCCAAAAGCTTGGGCCAATTTTGACCCAACTGGATTGGAACGAGCTGCTAAAGCTGCAAGAGAACTTGACAGATCAAagAATGCCAACCAAGCATTAGAAATAACCAAACTGCAAGAACAGACAAAACAAATTGAGCTGCAAGCAAGAGCAAAGGAAAATGAAGCAGCATTTGAGCAGATTAAAACAGACAGAGTTCGAACTGAAcaagaagagaaaagaaaaactcTTCAAACCGAAACACAACAACACAATCAGAGGGCACAATACCAAGATCAGTTGGCTAGAAAGCGGTATGAAGACCAGCTAGTGCAACAGgtATTTCCTAATTATCCTGCATTTACACGAAACTTATTTTTTGCAGCAACCGTTGAATACGAGGCTGAATTACGTCATAAGAACGAGATGAGAAAACTAGAAGCAAAGATGAAAGCACAGGCACAGATTGAACGTGAAAACAAAGATATAAGACTAGAACAGATTCGACTTAAGGCTGCTGAACAGAGAGAAACAGTTCTGCAATCAATAAAGACCGCGGGTAATATATTGGGTGCTGGTGCATCAGCATTTCTTACTGACTGGGACAAAATCTCGTCAACGGTTGCTGGACTAACTCTCCTTGCCCTCGGTGTTTATACAGCTAAGATGGGTACCGGAGTTGCAGCGAGatttgttGAAGCTCGTCTTGGTAAACCCTCTCTCGTAAGAGACACCTCAAGAATGACCTTGTTTACTGCAATGCGTCACCCAGTACAGGCTGTGAAGAAGATGTTTGTCAAGCCTGAAGATGCTCTTAAGGGTATTGTTTTGCAACCAAATTTGGAGACACGTTTACAAGAAATTGCATTAGCTACCGCCAACACGAGATCCAACAAAGGACTTTATAGAAATTTGCTGTTTTATGGACCCCCTGGAAcaggaaaaacaatgtttgccaaGagTTTGGCTTACCATTCTGGTCTGGATTATGCCATTATGACAGGTGGTGATGTTGCTCCAATGGGTCGCGATGGCGTTACTGCAATGCATAAAGTATTTGACTGGGCATCAACAAGCAGAAAAGGGCTGCTGCTATTCGTTGATGAAGCCGATGCATTTCTAAGGAGACGAAGTGTTGAACATATAAGTGAAGATCTACGTAGCACTTTGAATGCATTTTTATATAGGACTGGCGAATCTTCTAGAAAGTTTATGCTTGTCTTAGCAAGCAATCAACCCGATCAGTTTGACTGGGCTATCAATGATCGATTAGATGAAATGGTAGAGTTTAGACTGCCTGATGTAGATGAAAGAGAAAGATTAGTACGAAGATATTTTGAACAGTACATTCTCAATGCAGCAACAAAAGGATGGAGATCAACTCGAATCAAAGTTGCTGATTTCGATTTCAATGCAAAATGTAAACAAATCGCCGAAGACACTGCAGGACTCTCTGGTAGAGAAATCGCTAAATTGGGAATTGCTTGGCAGGCCAGCACATATGCGTCAACAGATGGTATTCTCACAGAAGAAATTCTAGACGCTCGAGTCAgagaaacaatcaaacaacaCAAACAGAAAGTTGATTGGCTGAAAGATGACAGCTCAAACAACCAATCATATATGAACCCCGAGTTACACAATGCATAG

Transcript

evm.model.HiC_scaffold_22.130

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6PAX2	ATPase family AAA domain-containing protein 3-B OS=Xenopus laevis OX=8355 GN=atad3-b PE=2 SV=1
A7YWC4	ATPase family AAA domain-containing protein 3 OS=Bos taurus OX=9913 GN=ATAD3 PE=2 SV=1
Q58E76	ATPase family AAA domain-containing protein 3-A OS=Xenopus laevis OX=8355 GN=atad3-a PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005459 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00957 all species →	Synaptobrevin	Synaptobrevin	Family	Interproscan
PF00004 all species →	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF12037 all species →	ATAD3_N	ATPase family AAA domain-containing protein 3, N-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR042855 all species →	Domain	v-SNARE, coiled-coil homology domain	Interproscan
IPR039188 all species →	Family	ATPase family AAA domain-containing protein 3	Interproscan
IPR001388 all species →	Family	Synaptobrevin-like	Interproscan
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR021911 all species →	Domain	ATPase family AAA domain-containing protein 3, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23075 all species →	PUTATIVE ATP-ASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0007005 all species →	Biological Process	mitochondrion organization	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17681	ATAD3A_B; ATPase family AAA domain-containing protein 3A/B	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.