Gene detail

Detailed information of evm.model.HiC_scaffold_22.60 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_22:950255...960890
NR annotation: XP_032228558.1, protein dispatched homolog 3 [Nematostella vectensis]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_22.60

ATGGAGAGCTTGCAGTTTGATGAGGGAAACTTGCTTATCGCAGGAAACACAGACGGTGACGACAGATCGAAAGAAAAATGTCTTGGCTCATGCCCAGGTCAAAATCTCGTACAAAGATGCTTTCAAATCTTCAAGATAATAGTAGCAAAGATCTGGAATATATACATTATAGCAAATACTAAATCATGGTCTGCTCTGTTGCTTTTGTTATTAGTAATCGGAGTAAACCTTGCGCTGTTTTTCATCGCAGTAGTCACACACCCCGTTCAAGTTGACTATTCTCTGAATGCTTTTGAAGTACCAGGtcataaagcatcgaaaaaatTAGAAAGTTTGATTGCTGCTAAAGAAGATCAGACAAAAGCTCGGCAGGAAGACAATGCAAAAAGGAGATATGGTAGAAACACAAACCCTGAAGTTGTTTTGAATTCTCAATACAGACAGAAATGGAAGCTTGATATTATATATTTAGCCAAGGATCATAATGTGTTCACTAAAGATAAACTTGAATATATTCATAAAATCGAAAAGAATCTTATGAAGCAAGAAAAGTTCAAAGATTTTTGCTGGAAGACTAAGAAAgcatatgatgatgatgagctgAGAAAAGAAGTCAATGGATGCATGCCTCCAAATTCTTTAATTGACTTTTTCTTCAGGACAAATCGTTTTGACGGGCAAGGCAAAGATATATCTGACATAAAAACAACCTTGGATTTTCTCCTGACAAAATTATCAACTTTCTGGTATGTCGATGAGAGATTTGGGGCCGATAATAGAAAGAGTAAATTCATGAGAAGTCAAGTAAATTTTGGGATTCCGCTGAAGGGGTATACATTGGAAGAAGCAAGTGTGAAGAAGCAGCAccagattttcaaggattttcttgtgaaatttgttGAGCAACTCGGAAAGGCATCATCAGACCAAGTAACTGTTCTATATGGAAGCCCAGAGATATATGATTATGAAATAAAGAGCACCTTCATTCATGATGTGCTTTTAGCATCTGTCAGCTTTGGACTAATCATGATACTGCTATTCTTATTGACTTCATTCTCACTATGGCTGACAATATTTGGAGTTCTTACATTTGTCTTCAGTATACCTTTGGCATACTTTTGCTACCGTGTTTTACTTGGGATAAAATCAATTGGAATTCTCACTGGAACAACTGTATTTGTTATCATTGGCATTGGAGTTGATGATGTCTTTGTTTTTATCAATGTTTTCAAGCAAGCTATTCATTTGAAAGACATAAGAGAGCGAATGAAGCACTCAATCCTTACTGCAGGAAAAGCAACGTTTTTCACATCATTTACAACCGCCGCTGCTTTTGGTGCTAATATTTTATCTAAAGTACCTGCCGTTCATGATTTTGGCCTTTTCACGTGCATTCTTGTGATGACCTGTTGGCTAATGGTGTTACTACTTATGCCACCTTCCATATTCTTATGGCAACGATGGTTGATAAAATGCGAGATGTGTGAAAACCTCATCGAAAATGAAGAAGTTGACGTCTCATTTCGTCCAGCACAGCAAGAATATGAAATGGGTAGCATTTCACAGGATGCAGCGAATACAAATGAAAGTCTCAACAAACAATCACCAGAGTGCTGCACAGTgacaaacttactaacaaaaTTCTTGGATAGATTTGTTGCTACCCCCGTGATTAAAGGTCGATTCATCATAGTTGTTCTGTTTCTTGCCATAACTGCCGGGTCAGTAGGTGTTATAACAAGGCTAAAAACAGCCTCAGGTCGTCCAGAGCTGTTCGCTGCAAACAGTAACCTTCAGAGGGTATTGAACATCAAAATGAACCTAAGCAGTGAGTCTATTGATTGTAATTCGTGTAATGAAGTCCTCAGTGAAGTTTATCCGGGAATTGCCTATCAACCGCTGGTCAGAAGAAGTGTTGGCGTCGATGATACTGCTGTAAGCTTTCAAGATTCTGAAACAGCGCTGAGAAGGGATTTCGAGGATCTGGCGTCGATGAAAAGTCGTGTGCATCTTTACGACCGTTTAATAAGAAGTTTGGAGGATGGAAAACCGGGAGAAAGAAAGAGCCATCAGCGTGATTTAGCGACAGAGCCTTCGATGGATGGCAAGGATATTCATGTTACAACTGCCATAGCGACCACCAAGAAGCCTACTACAATCCGACCAACTACCCCACCACTCTGTCCAAAACCATGTACTCCTGTAAAGAGACCAGTTCTTGATAAAAACGCAATGGTCTTTGTTGTATTTGGTATCAAAGGCGTTGATCGCAGTAGTGTCACAGGAAAGCATGTTATTGGCGATGTGGGAACCCCCATTTACGATGATAGGTTTACGATGAGTGGCACTAAACTTTCCGTCGTCGCTTCAGGTGCATTGGTGAAAGCCCTTTGCAAAATATGCAATGCATTTCAGTCTAATAAAGAGTTAGTTACACCTGGTGGTGCTGACTGCTTTCCAAGGCAAATGTACAGGCAGTTGAAGATATATCGATACAGCGAATGTCAGAATTTGACAGAACCGAATTATGCTAATAAGCAGGTGACGCTAAGCATGATTGGCTTGATTCATGGAAAGATTAAATGGATGGCCATGGCATTTGAATCGaCAACATACACTGGAAAGTCAGCGTTTCAAGTGGCAGAAGATTACGCGAGATGGGAAAACTTCACAAAACAAGTTCTCAATCAACCTGATATCCCAGAGATGTTGAAAAGTGGTTTTCAAACCAGTTATTCATGGGTGAATATGTTCTCTGAGATCATCGCTGTCAATGGTGCCATATATGGCATAACAATGTCCCTCATCTTATGTCTCGCTTCTGTCGTCGTTTTCACTGGCAATTTCAGGCTCTCGATGATTGTTTTCGTGACAATCGGAGGTGCCTTGTCGCTTGTTGTCGCCCTGTTCTATTTTATCGGATGGCGATTGGGTGCGATCGAAGCTATATCATTGTCGATTCTTGTGGGAACTTCTGTCGACTATACCATTCATATTACAGAGGGATATGTAATGGCTTCCAGAATTGAAGATCTCGATGGAATGACGAATAAGGAGATTCGATTCAAGCGTGCTCGCCTTGCTCTAAGTCACATTGGCGTATCAATATTCAGCTCTGCAATAACAACACTGATCGCTGCAATTCCATTATGCCTAACATCAATACGACTGTTCTCTAAATTTGGTGAAATCCTTGCTATCAACACTGGAGTCTCTATCCTATACACATTGACTATATGCGTGAGTCTGCTATGCATTTTTGGACCAACACGATATCGAGGCTCGGTTAAGTCTCATATTGTGGCGTTATTTCTTGTTTGTGCAATCATCGGCAGTTGTGTGCTCGTTCTGTATCTTTTAAGTGTTTATGGCAGTATAAGTATTCCAGGACCAAATGGAGGTCAGTTGTTTCATTAG

Transcript

evm.model.HiC_scaffold_22.60

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B9U3F2	Protein dispatched homolog 3 OS=Gallus gallus OX=9031 GN=DISP3 PE=1 SV=1
Q9P2K9	Protein dispatched homolog 3 OS=Homo sapiens OX=9606 GN=DISP3 PE=1 SV=2
A3KFU9	Protein dispatched homolog 3 OS=Mus musculus OX=10090 GN=Disp3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007833 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02460 all species →	Patched	Patched family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000731 all species →	Domain	Sterol-sensing domain	Interproscan
IPR003392 all species →	Family	Protein patched/dispatched	Interproscan
IPR042480 all species →	Family	Protein dispatched homolog 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46687 all species →	PROTEIN DISPATCHED HOMOLOG 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24683	DISP3, PTCHD2; protein dispatched 3	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.