Gene detail

Detailed information of evm.model.HiC_scaffold_229.2 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_229:12729...19540
NR annotation: MBN3297866.1, NUD12 pyrophosphatase [Amia calva]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q29RH3	NAD-capped RNA hydrolase NUDT12 OS=Bos taurus OX=9913 GN=NUDT12 PE=2 SV=1
Q9DCN1	NAD-capped RNA hydrolase NUDT12 OS=Mus musculus OX=10090 GN=Nudt12 PE=1 SV=1
Q9BQG2	NAD-capped RNA hydrolase NUDT12 OS=Homo sapiens OX=9606 GN=NUDT12 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011626 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00293 all species →	NUDIX	NUDIX domain	Domain	Interproscan
PF09297 all species →	zf-NADH-PPase	NADH pyrophosphatase zinc ribbon domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050241 all species →	Family	NAD-capped RNA hydrolase NudC subfamily	Interproscan
IPR000086 all species →	Domain	NUDIX hydrolase domain	Interproscan
IPR015797 all species →	Homologous_superfamily	NUDIX hydrolase-like domain superfamily	Interproscan
IPR020084 all species →	Conserved_site	NUDIX hydrolase, conserved site	Interproscan
IPR049734 all species →	Domain	NADH pyrophosphatase-like, Nudix hydrolase C-terminal domain	Interproscan
IPR015376 all species →	Domain	Zinc ribbon, NADH pyrophosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42904 all species →	NUDIX HYDROLASE, NUDC SUBFAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005777 all species →	Cellular Component	peroxisome	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006734 all species →	Biological Process	NADH metabolic process	Interproscan
GO:0006742 all species →	Biological Process	NADP catabolic process	Interproscan
GO:0019677 all species →	Biological Process	NAD catabolic process	Interproscan
GO:0035529 all species →	Molecular Function	NADH pyrophosphatase activity	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03426	NUDT12_13, nudC; NAD+ diphosphatase	EC:3.6.1.22	Peroxisome	ko04146	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.