Gene detail

Detailed information of evm.model.HiC_scaffold_23.201 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_23:2556647...2604455
NR annotation: XP_048583111.1, intraflagellar transport protein 172 homolog [Nematostella vectensis]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_23.201

ATGGGGATCCCATTCTGGTTAGATATCTTATTGGCTGTGCTTCAGTTAATAATTGGAGCTCTTGGCGTAACAAGCAATGTATTGCAGATTGTATTAATCAGGAGAAACAGCGACAATAAAACAATATTCATTATGACTCTTCTAAGTCTATGCATCGCCGATTTGATTACTTCAATAATGGCAACATCTATTGCATTAAATGATATTCTTAGTGCTCTAAACATAGCGAAAGCAGAGTGGTCTGAATTAGTAGCTATTACTGGATTTTCTTTCTCAAATGGAACATCATGCTTTCATATTCTATTCATTGCAATGCAAAGGTTATGCGTGGTGATGTTCCCGCTTCGCTTCAAGAGACTTTTTACAGTATTTCGTGCTAAATTAGCGTTGGTTTCCATTTGGTTTTTCACTGCAGGATTAACTACGTTTTATTGCTTCTTTCGCAAGTTTACCTTCACTCACTCCAGCTACGTACTGATAGCAAACTGCGTCACGCTAATTACTCTTTACGGCTGGCTTTGCTACAAAATGCAAAAGCACGAAAACGACCGACAACGAGTTTTGAATTCCAATCGTAAGACGAATCGGAGAATTTTCGTCCATTCAGTCGCAGTTCTCTCTGCGTTTATATTCTGCAACCTACCGTTTGCATTAGTATTTGCTTTTCCATGGCATGTTTTTGGAATAATTGGATATCGAGTCGGAGGGGTTATGATATCTTTGAATCCAATGTTAGATTCCCTGCTTTATTTTCTTATGAGCCACTGCAGGAAGAATCAGATCTCTTCATCTAGCAATGGAAATATCGAGCCTCCAAGCAATAACGATGGGGCAGCTAAAGTTACTGCAATGGCTTGGTCTCCTACAAATAACAAGTTTGCAGTTGTCACTACTGACAGAGTTGTAATACTTTTTGACGAGACAGGGGAGAGAAGAGATAAGTTTTCAACAAAACCTGGTGACCCCAAGACTGGAAAGAAAGGGTACCTTGTTAAAGGATTAGCTTTCTCTTCAGATGGTACAAAGATTGCTGTTGGACAAACTGACAACATTGTCTTTGTGTATAAAGTTGGTGAAGACTGgGGTGAAAAGAAAGTTATATGCAACAAGTTCATCCAGCAGAGTGCAGTAACTTGCTTGATTTGGCCCCCAGAACAACCTTTTGTCATATTTGGCCTTGCTGATGGGAAGGTTCGTCTGGCTAACTTAAAGACAAATAAATCACAAACAATATATGGAACGGATGTCTTTGTTACTTCATTATGTTCAAACCCCTCTGGCAAAGGAATCTTATCAGGACATATCGATGGTGCTATTGTGAGGTATTATTTTGACGATGAAGGTACTGGACTATCACAGggCCAGTTAGTTCGCCATTCGTGTGCTCCTTACGCTCTTTGTTGGGGATCTACAATAGTAGCTGCCGGTTGTGACAAACGAATTGCAGCCTATAGCAACGAAGGACGTGTATTACAGCGTTTTGATTATACAAAAGAGGATGAAAAGGAATTCACTGTTGCCATTTGCAGTCCAAGTGGTCAATCGTTTGTTGTTGGCAGTTTCGATCGGTTGCGGATTTTCAACTGGACACCTCGAAGAGGAGCATGGGAAGAAGGAAAGTCAAAGGAAATAGCAAACCTTTATACAATTAGTTCACTTGCATGGAAGCGTGATGGATCCAGGCTGTGTGCGGGAACCCTTTGTGGAGGAGTCGAGCTGTTTGACTGCGCACTAAAGAGAACTGTTTACAAAAATAAGTTTGAAATGACTTATGTGGGGCTTAGTCAGGTCCCGTGGCATGCTACTGGTGGCAATGAGAAATTCttctttgaaaatgaaaatGTTTGTATGATATTCAATGCTGGTGAGCTAACTCTAATTGAATATGGCAACAACGAAGTACTTGCGACAGTAAGAACCGAGTTCATGAACCCACATCTCATCAGTGTTCGGTTGAACGAAAGAAAACTCAAAGATCAAGAAGACAATAAGAAAATGGCCTATCTCATTGATTTGAAAACCATTTGCGTTGTTGACTTGTTAACTGGCTTCAATATGGCTAACGTATCACATGATGGCAAAATAGACTGGCTTGAGTTGAGCGAAACTGGGAAGAAACTTCTTTTCAGGGACAAGAAGCTTAAGCTACATTTGCTAGATGTTACAACTCAAAAGAGAACTACTATACTCAACTATTGCACTTATGTTCAGTGGGTTCCATCAAGTGACGTGGTTGTTGCACAAGACAGAAGCAATCTTTGCATTTGGTACAATATAGATTCACCCGAGCGAGTCACAATGTTTCCATTGAAGGGTGATATAGTAGATCTGGAGAGAGCGGAAGGAAAAACAGAGGTGATAGTTAATGAAGGAGTATCTACAGTTTCTTATACCCTTGATGAAGGCTTGATTGAATTTGGCACTGCTATTGATGATGGTGACTACGGAAGAGCAATATCTTTCCTTGAAAAGCTTGAGATGACACCAGAAACTGAAGCAATGTGGAAAACACTGAGTAAAATAGCTATGGACAATAGAAAGCTCTACGTAGCTGAAAGATGCTTTGCAGCTTTGGGTGACGTGTCAAAGGCTCGATATTTTCAACAGATCAACGATCTTGTCGACGACATCACCGCAAAAACTGGATCggatggacaaaatcatcctgTAGTTCGTGCTAAGCTTGCTGTTCTTGAAAAGCATTTTAAGTTGGCAGAAGGGGTTTATCTAGAACAAGGTATGGTCGACCAAGCAATGGAAATGTACCAAGAATTACATAAATGGGATGAATCGCTCGAAATTGCTGCTAGAAAGGGTCATCCTGAACTTGAAAGCCTAAGAACAACGTACCTTCAATGGTTGATGACATCAGGTCAAGAAGAAAAGGCCGGTGAAGTAAGAAAATCTCAAGGTGATTATTTGGAGGCCATAAACCTTTATATGAAGGCGGGGCTACCTGCTAGAGCTGCAAGACTTGCACTCAGTATCGATGAACTTGCAATGAATAGAGAGCTGCTTGAACGAATTGCAATGGCCCTGATGAAGGGTGGATTTTATGAAAGAGCTGGAGATTTGTTTGAGAAGGTGGGAGACACAGAGCGTGCACTCTCTGCTTTCAGGAAAGGAAAGACTTACAGACGAGCTGTAGAGCTTGCCCGCGTTACCTTCCCCAATGAGGTCATCCGCCTGGAAGAAGAATGGGGAGATTATCTTGTGTCTCAGAAGCAACTTGACGCTGCAATCAATCATTTCATCGAGGCAGGTTCCTCTGTGAAGGCGATTGAAGCTGCAATACAAGCAAGACAATGGAACAAAGCTGTTCAGATAGTTGAACTTCAGGATGACAGCGTCGCTCAAAAATACTACAGAGTTCTCGCCCAGCATTACGCACAAGTTCTTGACTACACGGTTGCTGAACGTTTCTTTGTCCGTGCTGGTGAGCCGCGAGAAGCTGTTGATATGTACACAAGAGCAAATATGTACGAAGCTGCTCACAAGCTTGCTGTCCGCTGCATGCCAGCAGAAGAAGTTCTTTCACTGTACATTAACCAAGCCCAGCAGCTTGAATCGCAAGGAAGATATAAGGAAGCAGAAAGATTATACATTACTATTCAAGAACCAGACATGGCtataaatatgtataaaaaGCTGAAACTCTatgaccaaatgatcaaattgGTAACACAGTATCACCCGGAACTTCTTACGGACACTCATCTTCATTTAGCAAAGGAGCTCGAAGAGGAAGGACAAAACAGCCAAGCTGAGCACCATTATATCGAAGCTCAAGACTGGAAAGCAGCTGTAAATATGTATCGAAAAAATGACCTCTGGGAAGATGCTTATCGGGTTGCTAAACAACACGGAGGTGTAACTCCTGCAAAACAAGTTGCATATCTCTGGGCAAAAAGCCTTGGTGGTGATTCTGCTGTAAAGTTGCTGTCAAAATTCAATCTGCTGGAAACTGCCATTGACTATGCAGCTGATAACGGGTCCTACGACTTTGCTTTTGAACTGGCAAGGACTGGAATGAAAAACAAACTGCCAGATGTGCATTTGAAATACGCAATGTATTGGGAAGATGAAGGAGACTTCAAGAAAGCTGAGGATGAATTTATCAAAGCTGCAAAACCAAAGGAAGCTGTACTTATGTATGTTCACACTCAAGATTGGGATAGTGCACAGCGCATTGCTGAAGATCATGTTCCTGACAGTATACCGGATGTTCTTGTTGGCCAAGCTCGTGCTGCATTCACCAAAAAGGAATACCAAAAAGCAGAGTCTTACTTTTTACGAGCGCACAGACCTGAACTTATCATTAGACATTACAAGGAAGAAGGAATGTGGGCTGATGCGATGCGAATTGCGAAGGAGTATGCTCCACACAAGTTAGGTGCATTACAAGACGAATACGACCAGGAAGCAAACAGAGATGATAAGGGATTGGATTCGTTActttcacaagcgaaagatTGGGAATCACGTGGTGAATACAGCAGAGCAATAGACATTTACTTGAAGTTGACAACTTCAATGACGAAGAATTATGACACACTGGAGGAGGCTTGGACTAAGGCCGTGGAACTCGCAGTGAAATTTGTACGTGACCGAGCCATTGAAGTAACGCAACAAGCCTGCACCAAGCTGTGTGAGATTGAAGCATTTGAACAGGCAGCTGAGATGTACCAATCAGTAAAACTCTACAAAGAAGCAATAGATGTTTACATTGATGGTCAATTATGGCCATTGGCAAAGAGATTGGCAGCTGATATCGCACCAAAATATGAAAAGTATGTCGAGGAAAAATATGTTGCTCATTTGAAAACTGAACAGAATCCTGATAAGCTCATCGATGTAGATGTTATTGGTGCTCTTGATATGTACGTGGAACAAGGACAATGGGAAAAATGTATCGAAGAAGCCGAGCAGCAGGAAACCATATCTGCGAAAATTTCAGTGACTTTGTTGAGATATTCTGATGTAATTCCTTGTGATAAAGCTTTCTATGAAGCAGGCACAGCTTGCAAGGCGGTAGGATGGGACAATATGGCGTTCGTTTTCCTCAACAGATATCTTGATCTTAGTGAGGGAATTGAAGAAGGAAACCTTGATATGATAGACAACAGTGATTTCATGGAAACTGATATTCCTCTAGAAGTTCCAGTGCCTGAAGGCCAATTTCTACCTGAGGAACGCCGGGAAGAAGTTAAAGAATGGGTGCTGGCCGTATCGATGGATCAAAGAGTTGAACAAGTACTACCGCTAGATGAAAGGGATACCTATGAAGCATCCCTAGTTGCAGTGAACACTGAGATAAAATCGCTGCCTTGCGTTATAACTGGTTACCCTGTCCTGCGAAACAAACTTGAATTCAAGAGAACAGGACGAGCTGCTAATAAGGAAGACTGGAACAAGTTTGTCATGGCAACTAAGGTTTCACACAGTCCCGAGTGCCAAGACGTGTTGCATTTCCTAAGCAGCTGGTGTGGTGCGTCACAGAACCCTTCTTATTCTTTCAACAGCACAGCAGTGCTTCAGAAAGCTCTGTTGCTTGTAACAAAACTTGGGCCTTTACGAAAGACTTAG

Transcript

evm.model.HiC_scaffold_23.201

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6VH22	Intraflagellar transport protein 172 homolog OS=Mus musculus OX=10090 GN=Ift172 PE=1 SV=1
Q9UG01	Intraflagellar transport protein 172 homolog OS=Homo sapiens OX=9606 GN=IFT172 PE=1 SV=2
Q9JKU3	Intraflagellar transport protein 172 homolog OS=Rattus norvegicus OX=10116 GN=Ift172 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001845 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10328 all species →	7TM_GPCR_Srx	Serpentine type 7TM GPCR chemoreceptor Srx	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR019430 all species →	Domain	7TM GPCR, serpentine receptor class x (Srx)	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15722 all species →	IFT140/172-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005930 all species →	Cellular Component	axoneme	Interproscan
GO:0030992 all species →	Cellular Component	intraciliary transport particle B	Interproscan
GO:0036064 all species →	Cellular Component	ciliary basal body	Interproscan
GO:0042073 all species →	Biological Process	intraciliary transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19676	IFT172; intraflagellar transport protein 172	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.