Gene detail

Detailed information of evm.model.HiC_scaffold_23.479 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_23:6222762...6249966
NR annotation: XP_028413035.1, probable dimethyladenosine transferase [Dendronephthya gigantea]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_23.479

ATGGACGCGAATTTTATCTTGACTTTTCTTTTACTCATTTGCCTTTCACACGATTGTTCATCAAGAATCAAAGCAAAAGATGAAAGTTCTGATGAAATATTCGAGAATATTTTGAGAGAGAGAGGGCTGGCTCCTCCTCATGAATTGTTTGGGAAAACAGACAAGAAGAAGCATCTCGCTGCTGATGACCAAAACAGGCCTAACAATGAGATGCTTCAGgaaaaagaaatggaaattAACTCCTTGAAAGACAAACTTAATGAATGCAATTTTAAGAGATCCAAAGTGATGGAAGAGTTTGTTGAGAAAACAATAATGGACTCATCACGGAGCCTTGAGCTACCCTACTTGAAGCAGATATTTCGGACATTTCTTGCAGGTTTAAATGCAGAActcaatgttgaaacaaatgtAACAAAAATGTTATTCTTGGTAGATGATAAAGACAAAGACATTTTGCTGAAATGCTTGGATGATGAGAAAGATGTTCAAACTTGTGTTGATGCATTTATGAAGTTTCTGAAAACAGCACATGCAGTAAAGCCTTCACAGATAATGCAAACTCTACTAAAATaccttgaaaaaataaaactggAACACGTAATGTACATCATGCTTGGCACTGCTTTTATTATATCATGTTTTTATGCAACCAAAGTGATTCTGTCAAGGAATAGTTTATTAGGAATGGCAGTTGTGTTGCTGATTATAAGCTTCTTATTGAGTGTCCCTTGGGAATGGATGCGTATATATTGGTTTCAAGATACATTTTCATTTGCTGATAGTGATTGCTTGCAGCATTATGAGTCTATGATGGTTGACCCACATTGGGAGGTCACCCCTGGTCAGGCAGTGGCAGCTGCATCTTCAAGAATTTTTCTCCAACCAGCCCTTCATATTGCTGAGCATCTTGGGAAATTCTTCAGATTGATCTTCAAAGAAGTTCCTGTTCAGTGGcaaccatttattttcatagCAATGGTTGTTTCATTTCTCTTTTCCATTGGTATTCAAATATACACCCCGCTGCTGAGAATTGGAAGAGGCGGAGAGGGGGATCGTAATGCCCTAGCAGCTCAGAGAGCACATATAGCAGCCTTAGAGGGAGAAGTTGGCAGACTTAACAGGGAACTTGAAAATTATCAAGCATTGCCTGCCGTAGagcAGAGACGCAATGAAGTACCAGAAATAAGAGAAAATATCAACGCGAATGACTACGTTTTCGTTGAAGCTAACGCAAATGCGGACGCAAATGTAGTCGAAGACGTAAGGGAAGATGAAGGAAGACGGCCTAAGCAACCCACCGAAAGCATACAGTTCAATACAGGAATTGGACAACATATATTAAAGAATCCTTTAGTTGTAAATGGGATAATTGAAAAGGCTGCCATCAAAAGCACTGATACTGTTCTTGAAGTTGGACCAGGTACTGGAAACATGACAGTGAAGATtctagaaaaagcaaaaaaggcaaCTTGTGAAGTAGATCCAAGATTGGCAGCAGAAGTACAGAAGAGAGTACAGGGAATGCCTTATTCTTCTAAACTGCAGCTCATTATGGGTGATGTTCTAAAAACAGAATTACCCTATTTTGACTGCTGTGTTGCTAATTTACCATATCAGATATCCTCTCCATTTGTTTTCAAACTACTCCTGCATAGACCTTTCTTCAGGTGTGCCGTTCTTATGTTTCAAAGAGAATTTGCTCAGAGACTAGTGGCTAAACCGGGAGATAAACTGTACTGCAGACTCTCAATTAATACACAACTGCTGGCAAAAGTTGATCATTTAATGAAGGTCAGTAAAAATAACTTCAAACCTCCTCCAAAAGTTGAATCGAGTGTTGTTCGAATTGAACCAAGAAATCCCCCACCACCAATCAATTACAAGGAATGGGATGGATTGGTCAGAATAGCATTCGTACGAAAAAACAAAACCCTGGCAGCTGCTTTTGATTtaattgtttttatCTCATTCATTccgcaaagcggcatcaaactgtaccgtattcatccGTTTaaactatgccgttttcagatgaaaccagttagcgtatcgtattcatttcgtaccttattcatatcaaaactgtgtcgccatagtgtagacgcaaggccgaAACGGTATAGCTTCGTACCAAAAACCATTAGAAGAATTGAAAGGTCAGAAGATATTAATCAAGCAGAAGAATCAAAGATTGTCAGTGCTTTACAAGACTTTTTTCAAGATttacatgaaaatgaaaagacaCTGGGCAAGGAAAAGCAAAAATCAGCTGAAGTAaccttgaaagaaaaatttggatTTTCTATTGAAAGAAAACAGAGCAAGATTAAAAATGCGGGACATGGTGTCTTTGTGAGTGATGGCTGCATACCCAAAAATCACATTGCAGCCATGTATCCTGGAACTGTATATTATCCTTCTGACCCACTGTTACTACAGTCCATTGGAAACCCATTCATCTTACGTTGTATTGATGGTCTAATGATTGATGGAAATAACAGAGGAATCAGTAAACTAATTTTTAGATCTTGCTCAGGCAGGGATATGATTGGTCCATACAAACCATGTGACACATCTTGGCTGACTGACAGTTATAGTAACCCACTTGCTATTGGACAATATGTGAACAATCAAACTTCATCACAGCCAGCTAATGTTGTGTACCAGGAGGTTGATATAACCACTTCATTCCCAATTCATTTGAGACAATATTTACCAAATATTTGGTACCAGAATCAGTATATGGAcaggcatgatgatgatgatgaggaactGCAGTTTCTGAGGAATGCTTTAGGCCTAAAAATCGAAAGGATATCTGGTGCAGAAACGATTCTTTGTATGTCATTGCTTGCCGCAGCTGGAATATTCCTGTTAGTTATTAGCTGTGCACTACCGCAGTTGCAAACACCAAAGGGaACATATAACTTAGAAGGGTTATCAATCGATAAATTCACCTATCaggaaagtgaagctgaaacAGCTTGTGCAaTCAAATGGGGAGCTGTTGGAATTGTTGCATTAGCAAACTTATTTATCTTTGGGACAATGTATGCATTCTTCAAGAGATGTGAAGAAcatgataacgataatgaaaCTCAGTGGAAATGTgacttcagatcgtataaaaaTGCTGAAGAAGCCATGATGTCTATGCTGAGACACCAAGGAAAGAACTAA

Transcript

evm.model.HiC_scaffold_23.479

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UNQ2	Dimethyladenosine transferase OS=Homo sapiens OX=9606 GN=DIMT1 PE=1 SV=1
Q9D0D4	Dimethyladenosine transferase OS=Mus musculus OX=10090 GN=Dimt1 PE=2 SV=1
Q95KJ0	Dimethyladenosine transferase OS=Macaca fascicularis OX=9541 GN=DIMT1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005704 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00398 all species →	RrnaAD	Ribosomal RNA adenine dimethylase	Domain	Interproscan
PF05934 all species →	MCLC	Mid-1-related chloride channel (MCLC)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR011530 all species →	Family	Ribosomal RNA adenine dimethylase	Interproscan
IPR001737 all species →	Family	Ribosomal RNA adenine methyltransferase KsgA/Erm	Interproscan
IPR009231 all species →	Family	Chloride channel CLIC-like	Interproscan
IPR020598 all species →	Domain	Ribosomal RNA adenine methylase transferase, N-terminal	Interproscan
IPR001875 all species →	Domain	Death effector domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11727 all species →	DIMETHYLADENOSINE TRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000179 all species →	Molecular Function	rRNA (adenine-N6,N6-)-dimethyltransferase activity	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0000154 all species →	Biological Process	rRNA modification	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0031167 all species →	Biological Process	rRNA methylation	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0042981 all species →	Biological Process	regulation of apoptotic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_23.479.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.