Gene detail

Detailed information of evm.model.HiC_scaffold_231.7 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_231:130286...143618
NR annotation: XP_015753038.1, PREDICTED: putative nuclease HARBI1 [Acropora digitifera]
Species abbreviation CQUIN · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_231.7

ATGGATTTATCTGATCTTGTTCCTACAAACAGTGCATTAGATGCAGAATCCTGGGATGATTTGGACATGTATTTCGACCAAAGTGGAGATGATACATCATCATCAATTCATGACTCGGATATTTTTTATCAATCGCAGCTGTCCATGCAAAAAAACAGAAAGATCATTCAAGAATCAAGCATGTCTGTGAATTCATCTGCAGTATCAAGTTCTGAAATCGAAAATGTCAACAATGTAAGTGTGGCCTACTTGCAGTGCCTTGTAAATGACAACTTTTCTCCGATCATGTCTactaaaaatatcaaagaaaacttTGACAAAAAAGCATTCCCAAGCTCAAGTGACTGCTCAGTTGTGTCAAGTAGTATGGAACGTCTTCATCTTCCACCAACTCCGCCAGCTCAAGCAAATGATAAAGGTTCAAAGAAATCAGAAATGCTTTCAAGTACAATGGGAAACATGTTGAACTTATCCACATCAGTAAAAAGGATCACAGATGAAAAATTAGTTACTTTATCAGTtaaagaattaaataaaacaCTGAAAGAAATTCCACGTTCTGAAATGTTGTTATTAAAGCAGAGAAGACGACTTCTCAAAAACAGAGGTTATGCTCAGAAGTGTCGAAGTCGAAGAGTTCAACAGTACAAGTATTTGTATGAAGATAATGAAGACTTATACAGAAAAATAGAAACTCTTGAAAAAAAGTGCTCTACGTTGTCTGCCTTTGGAACAACCGACATTCTCCTGTGTTTTTCTGTTGACATCGGTCTGCTTCGGATTTTGCAATCGTTACTAAATTCTTTCTCCGTACAAGCGTTTCTGACAATGGGAGATGAAGGCACTGGAATGTTATCAGGTCCTGGAAATACTTCTGAAAGTGCTCCTTTGCTAGATGAAGATAAACAAGAATCCGTGCAGCCACGTCTTGATGAAAGAGGAGATTTTCCAGATACTCCACCTCCAGCATACAATGAAGCACCTCCACCATATAGCTCTACCCCACCAGCTGATTTTGCAGGAGAGCCGACTGTTGTTTGCAGAGTATGTAAACAGCTAATTTTTATCAGGGGTAGAGAGAATCAGCGAGTGGTCAAATGTGGAAGCTGTCATGAAGCAACTCCTATTAAACCACCACCGCCAGGAAAGAAATATATAAGGTGTCCCTGCAATGCTCTATTGACTTGTAGATCAACTTCGACCAGAATATCTTGTCCAAGATCAGACTGCAAGAGAATAATCAACGTTGGCGGAGGTCCACCACCTAGCACACCAGTGGCCCAGATTCCGAGCTCTGATACAAGAATAAGAGTTACATGTGGACACTGTAATGAAACATTCGTGTTCAGAACTACTGCACATCTAGCACGCTGTCCTTATTGCAGAAAAGTGTCCTCCGTTGGCCCAAAGTTCGCCAAAAATCGCGCAATTATATTTGCTATTGTTGGATTTGTTTTCTTGCTAGCTGGAGTTGGTGTTACGATTGGAACATTTGAGCTTGCTAAAAATTCCGGAGGTATATATGTTGTCTGGATCGAGAGGATACACGATAGTTTGAGAAAAGAGACAATAGCTGAGGACCCAATTTCTCCAGAGTGCAGGCTTGCAGTCTGCTTGTATCGCTTGGGAAGAGGGGACTACCTTTACACTATTTCGGAGTTAGCTGGTATAGGAGAGTCAACTGCTTGCGAGATTGTCATGAATGTTTCCAAAGCTATTATTGATAGTCACTGGGAAGATTCCGTTGCCAAACATCTGCCAACGAGCCATGCTGAAATGgaaaatgcaatgattttgaTGGATCATGAATGGCAATTTCCATTTGCATTTGCAGCAATCGATGGGAGCCATATCCCCATCAAATGCCCTCCAGGGGGTGCAGAAGCAGCTAAGGAATATCACAATTTTAAGAACTTTTTTTCTGTAGTTCTTATGGCATTTGTTGATGCAAAGTACAGATTTGTATGGGGAAGCTGTGGGTATCCTGGTAACTCACACGATAGTATTATCTTTCAATCAACCAATGTCTATGATGATCTCAATTCAGGCAACTTCCCTGCTATTTCTCATAAAGAAGGAAACACTGAAATCCCACCTATTTTACTTGGAGATGGGGCTTTCCCCTTTCATTCATGGTTGATGAAGCCCTACTCCCAAGCTACATTGTCAGCTGAGCAGAGTTACTTCAACTATAGACTCAGTAGAGCCCGGATGGTGACTGAGGGAGCTTTTGGCAAGTTGAAGGGGAGGTGGAGGATTCTATCAAAAACTTGTGAGAGCAATGTCGAAACAGTGAAGGCAATGACACTTGCATGTGTTGTATTGCACAACGTTTGTATTGAGCAAGGTGATGTGAACTTGAGGAAGTGGGACCTTCACTTGGATGAAAAGGGAAATGAGAGAAGACCTTCAGCAGTTGTACGTGATATGCTCCATATGACTGGATGCAACAGGGTTAGAGATAGCAACAAGAGAGCATCAACAATAAGAGATGCTTTGAAATGCAAGTTTTTTAAGGAGAAACAAAAAGACAACTAG

Transcript

evm.model.HiC_scaffold_231.7

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q86T03	Type 1 phosphatidylinositol 4,5-bisphosphate 4-phosphatase OS=Homo sapiens OX=9606 GN=PIP4P1 PE=1 SV=1
Q4R6W2	Type 1 phosphatidylinositol 4,5-bisphosphate 4-phosphatase OS=Macaca fascicularis OX=9541 GN=PIP4P1 PE=2 SV=1
Q66I51	Type I phosphatidylinositol 4,5-bisphosphate 4-phosphatase-B OS=Danio rerio OX=7955 GN=tmem55bb PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000347 (this species only)
Transcription factor family	TF_bZIP · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13359 all species →	DDE_Tnp_4	DDE superfamily endonuclease	Domain	Interproscan
PF03131 all species →	bZIP_Maf	bZIP Maf transcription factor	Coiled-coil	Interproscan
PF09788 all species →	Tmemb_55A	Transmembrane protein 55A	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008917 all species →	Homologous_superfamily	Transcription factor, Skn-1-like, DNA-binding domain superfamily	Interproscan
IPR027806 all species →	Domain	Harbinger transposase-derived nuclease domain	Interproscan
IPR004826 all species →	Domain	Basic leucine zipper domain, Maf-type	Interproscan
IPR019178 all species →	Family	Phosphatidylinositol 4,5-bisphosphate 4-phosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21014 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0005765 all species →	Cellular Component	lysosomal membrane	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0030670 all species →	Cellular Component	phagocytic vesicle membrane	Interproscan
GO:0031902 all species →	Cellular Component	late endosome membrane	Interproscan
GO:0034597 all species →	Molecular Function	phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity	Interproscan
GO:0046856 all species →	Biological Process	phosphatidylinositol dephosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_231.7.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.