Gene detail

Detailed information of evm.model.HiC_scaffold_24.71 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_24:454696...486996
NR annotation: CAB4014243.1, Transposon Ty3-G Gag-Pol poly [Paramuricea clavata]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_24.71

ATGCCGTTTGCCTATTTCTTCACTGAATCGGAAGGGTTTGCTGGATCAACAAAGGGTATAAAGGCAAGAGTATACGAAACATTTGTTGTGCTAACACTTCTTGGAGTTCTAACTGTTAGTCTTGGATGGGTAATCTATGGTATTCTTCACAACGAAATCCATGGCGATTCCTGGATGCCACATCTTCCATTTGTGTACTCTTGTATATCACTGTTTGGCGTATTGTTACAATTAGtATGTGCTCCTCTGGGATTTGCAAGATTATTTAGCGTCTTAGGACAGTTTGTTGTAAAACCTCAGTTTCTTCGTGACCTGAATGATGAACTAAAAACAATTTATCTGCAAGAAGACACTATGAAACGTAAGATAACATGTGCTAAAAAGAAAACTTTCCACTTGGCTCCAAATACTGAAGAAACGAATATATTCGCACAAGTCTTAGAGTTACGAGAAGAACGAAAAATGCTTGGTGAGAAACGATTTATCCCTACCTTCTTTGCTCGTTGGTCCTCACGAGATCTTGTGCTCGATTTGTTTGTTGTATTTTATGCCGAATTTATCGTTGATTATGTATCGAGTTGTATGGGCCTAAATTGGCGATGGCTCGACGAGGACAAggtgctgctgctgctgctgctgctgctgatgctgCTGATACTGATGAGATCCAAAGAAATTAGTATTCACTGTTTAGACGTCCTGATAAATATCGAATCGAAGTTAATACTTTATTTTGAAACTGTAGAActtgaaaatgtaaagaaaagaAGACTTGCGTTGTTATTCAATTTGACTGATGATGCCTTTCGTTTAGCAGAATCTGTCGAGTTTGacagtgaaaatgaaaacccaGATGGTTGGAAAGAATGGATAGAACAACTTAAAGTATTGTTTGAGAGAAATCAGACACAAACAGAAAAGCGGTACAATTTTAATAAAAGAATTCAAGAGCCTGGAGAGTCTGTTGACTCGTATGCTGTTTCTCTACGTGAATTTGGGGCAAAATGCGGCTTTAAAGGAGAAGAGTATACTAGCAGACTTATAGATCAGTTCGTATTGGGTTTGAAGGGTCAGTCGACACAAAATAAGCTGTTACAGGAGCCACCAGCAACCCTGGATGATGGAGTATCACTCGCTAGAAGATTTGACGCAGCTAATGCAACAATGCAGAAACTGAAAGCTGAAACCTATGTCAATGAACAACAGCAAAGCTCAAGAGTTCAGATTGGAGCAGTCAGTTCCTTGAGAACTGCCCAGGTGTGTTTTAGTTGTAATGGTTTTGGACATGTTGCGAAACAGTGCCCTACTCTGCAAAATATTCAGGCAAGACGAAATAATAAGATCTGCTATAATTGTAACAAACCAGGGCATATCTTTAGAGATTGTAGAGCAAATAAAGTTCATATGCCTAATACTGTTTTGCCCTCTCAGAATCCCAATCGTAATCCTTCAGGAAATATTCCAAGCAATTTGAAATGTTATCGTTGTGGTAATAAAGGGCACACATCTAGAGTTTGTAGAGCTCAATTACAGCCTGAGGATAAGAACGAAGTACAGCTTACTGACAATCAAAGCTCAGAACAACAGTCCAAAAGTGATACATGTGTCAGATTGTCTTCAGTATTTCCAGTGAATAAAAAGAAGACCCTCGTGATAGAAGTTAATTTAAATGGTATTGCACGCCTTTGTGTAGTTGATACTGGAGCTTCAGTCTCCCttatcagtaaggatgagtggCAGTTGCTTACAAATGACTCAGATTCACTCTTACCTTTAGACATTGTTTCTGAGGCAGCAAACAGTTCCCCTATTGGAATTCTGGGTAAAACATTTCTGTCAGTTGATatcaatgaaaatcaaaagCGTGAGCAAGAGTTTTATTTAACCAATGAAATGTACTACCGTCGATTCATCTCAGGTTTTAGTGACATAGCGACTCCGCTAAATAAGCTATTGCAGAAAGATGTTGCATTCGTTTGGTCTGCTCACTGTGAAAATGCCTTCAAAAAACTGAAAGAGCAATTATCAACTTGCCCTATTTTAGCATATCtagataatgatgctgatttcATCTTGTATACTGATGCAAGTGATGTTGGGATAGGAGCTGTCTTAGCCCAAAAGAAAGGAGATGGAGACGAAAGAGTAATTTCTTATGCTTGCAAAGCATTTTCACCTGCTGAAAGAAACTGTACTGCTACAGAAAAGGAGGCTTTTGCTATAGTTTGGGCGCTTCAGTATTTTCATGCATATGTTTTTGGTAGAAGAGTTACAGTTTATTCTGATCATAAGGCATTGCAGTGGCTACGTAATATCAAGCATCCAAATGGAAAGTTGGCAAGGTGGATTCTAAAACTAGAGCAATATGATTATGTGATTATACACAAGCCAGGCACTGCTATGAATCATGCAGAAGCACTTTCTCGTGCGCCTGTTAATAGTATTAAAGTTTCTATTTGGTCCACAGAGGACTTCAAAGAGCTCAGGATTTAG

Transcript

evm.model.HiC_scaffold_24.71

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9D1E5	Protein LMBR1L OS=Mus musculus OX=10090 GN=Lmbr1l PE=1 SV=1
Q4R7X9	Protein LMBR1L OS=Macaca fascicularis OX=9541 GN=LMBR1L PE=2 SV=1
Q6UX01	Protein LMBR1L OS=Homo sapiens OX=9606 GN=LMBR1L PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006568 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17917 all species →	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF04791 all species →	LMBR1	LMBR1-like membrane protein	Family	Interproscan
PF00098 all species →	zf-CCHC	Zinc knuckle	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR021109 all species →	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR008075 all species →	Family	Lipocalin-interacting membrane receptor	Interproscan
IPR041373 all species →	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR006876 all species →	Family	LMBR1-like membrane protein	Interproscan
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR001969 all species →	Active_site	Aspartic peptidase, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR34072 all species →	ENZYMATIC POLYPROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0004190 all species →	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_24.71.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.