Genomic Location: HiC_scaffold_247:71741...87494
NR annotation: MCG8032936.1, DDE-type integrase/transposase/recombinase [Candidatus Thiodiazotropha taylori]
Species Chrysaora quinquecirrha · all data for this species · gene families
| CDS |
| evm.model.HiC_scaffold_247.7 |
| Transcript |
| evm.model.HiC_scaffold_247.7 |
| Protein |
| evm.model.HiC_scaffold_247.7 |
| UniProt accession | Description |
|---|---|
| Q7LHG5 | Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2 |
| Q99315 | Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3 |
| P0CT41 | Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000010 (this species only) |
| Transcription factor family | NF-YA · all TF in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF17921 all species → | Integrase_H2C2 | Integrase zinc binding domain | Domain | Interproscan |
| PF17917 all species → | RT_RNaseH | RNase H-like domain found in reverse transcriptase | Domain | Interproscan |
| PF00078 all species → | RVT_1 | Reverse transcriptase (RNA-dependent DNA polymerase) | Domain | Interproscan |
| PF02045 all species → | CBFB_NFYA | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | Family | Interproscan |
| PF00665 all species → | rve | Integrase core domain | Domain | Interproscan |
| PF00098 all species → | zf-CCHC | Zinc knuckle | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001878 all species → | Domain | Zinc finger, CCHC-type | Interproscan |
| IPR036875 all species → | Homologous_superfamily | Zinc finger, CCHC-type superfamily | Interproscan |
| IPR043128 all species → | Homologous_superfamily | Reverse transcriptase/Diguanylate cyclase domain | Interproscan |
| IPR041588 all species → | Domain | Integrase zinc-binding domain | Interproscan |
| IPR001289 all species → | Family | Nuclear transcription factor Y subunit A | Interproscan |
| IPR050951 all species → | Family | Retrovirus-related Pol polyprotein | Interproscan |
| IPR012337 all species → | Homologous_superfamily | Ribonuclease H-like superfamily | Interproscan |
| IPR041373 all species → | Domain | Reverse transcriptase, RNase H-like domain | Interproscan |
| IPR043502 all species → | Homologous_superfamily | DNA/RNA polymerase superfamily | Interproscan |
| IPR000477 all species → | Domain | Reverse transcriptase domain | Interproscan |
| IPR001584 all species → | Domain | Integrase, catalytic core | Interproscan |
| IPR036397 all species → | Homologous_superfamily | Ribonuclease H superfamily | Interproscan |
| IPR018362 all species → | Conserved_site | CCAAT-binding factor, conserved site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR37984 all species → | PROTEIN CBG26694 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0003700 all species → | Molecular Function | DNA-binding transcription factor activity | Interproscan |
| GO:0006355 all species → | Biological Process | regulation of DNA-templated transcription | Interproscan |
| GO:0015074 all species → | Biological Process | DNA integration | Interproscan |
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0016602 all species → | Cellular Component | CCAAT-binding factor complex | Interproscan |
evm.model.HiC_scaffold_247.7.
