Detailed information of evm.model.HiC_scaffold_25.84 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_25:1597823...1616291
NR annotation: CAB4024240.1, ATP-dependent DNA helicase PIF1, partial [Paramuricea clavata]
Species Chrysaora quinquecirrha · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9UUA2ATP-dependent DNA helicase pfh1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=pfh1 PE=1 SV=1
Q1HG60ATP-dependent DNA helicase PIF1 OS=Rattus norvegicus OX=10116 GN=Pif1 PE=2 SV=1
Q9H611ATP-dependent DNA helicase PIF1 OS=Homo sapiens OX=9606 GN=PIF1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007427 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05970
all species →		PIF1PIF1-like helicaseFamilyInterproscan
PF04614
all species →		Pex19Pex19 protein familyFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006708
all species →		FamilyPex19 proteinInterproscan
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR010285
all species →		FamilyDNA helicase Pif1-likeInterproscan
IPR038322
all species →		Homologous_superfamilyPex19, C-terminal domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12774
all species →		PEROXISOMAL BIOGENESIS FACTOR 19Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005777
all species →		Cellular ComponentperoxisomeInterproscan
GO:0005778
all species →		Cellular Componentperoxisomal membraneInterproscan
GO:0033328
all species →		Molecular Functionperoxisome membrane targeting sequence bindingInterproscan
GO:0045046
all species →		Biological Processprotein import into peroxisome membraneInterproscan
GO:0000723
all species →		Biological Processtelomere maintenanceInterproscan
GO:0003678
all species →		Molecular FunctionDNA helicase activityInterproscan
GO:0006281
all species →		Biological ProcessDNA repairInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.HiC_scaffold_25.84.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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