Gene detail

Detailed information of evm.model.HiC_scaffold_254.2 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_254:38920...43504
NR annotation: XP_020627207.1, uncharacterized protein LOC110064491, partial [Orbicella faveolata]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_254.2

ATGGCACACCAAGGAAACGAAGCAGATGCAGCCCCTGGAGAAGCAGAACAACCAGCACCAGCAGCAAGACCAGTACCGGCACCCAGACCAAGACGAACCATCGTAGACATTCAGCAATTCAGTGGAAAAGAGACTGAGGACATAACAGAATGGCTGTTGAAATGGGATATAGCTGCAGCAGCGAACAATTGGTCAGACGAGCAGCAACTTCAGATGATTCCTGCGTATCTCAGTGGACGAGCAGCAAGACATTTTTGGAGAATGCCACAAGAAGCTAGAAGAGATTTGGAGCAGCTCAAAGATCTGTTAGAAGACACCTTCAACAccgaagaaaagaaatttttggcgAGACAAAAGCTGCAAGAAATCACGCAAGGATCCCGGGAATCTGTGATGGAATTCTCAGAAAGAGTTGATCGCTTGGTCATAAAGGGTCACGATGGACTAGACAGCACGGAAAGAAAAGACCGAATCGCATGTGAAAGTTTCGTAAAAGGACTGAGGCCAGAGATAAAGGAGACCGTTTGGGAGAAAAGTCCGCATACATTTCAGGAAGCAGTAACGGCAGCAGAAAGACGCGAAGTGTATCTGAATTCCGTTGGTAGAAGAGGAAAAGTGAACGAGATATCAGATGATGTGATGGCAGCAATTCAGAAGTTTAATGAGGATCGCACGAGGAGCAATGAAGAAATCTGGCAGGCGATAAAGAATCTCACCGTGGCAGTTCAAGACCTTGCAGTGAAAACAGCCGAATCATCACAACAGCAGATCTTCAGACAGCAGAATTTCCGAGGTAACAGACCGAATACCCGATCTTTGGTGTGTTATGAATGTAATCAGCCAGGAGCTGGCGGAAGGAAGTTGTCTGTCGTTGGTGAAACGAAAGTCTGGCTTGAAATTGGTGGTAAGAATTTCGATTTGcctgttgttgttattgatgatttcaaatttgatttgttgatGGGAGATGATTTTTTGAGAAGTAAGCATGCTGTTATTGATTATGGCGGGAAAATATTAAGGATTGATGATGTTTGTGTTGATTTTGAGCCGTTACCGTCtgaatgttttgctgttttgaggTCTATTGTAGAATTACCTGTTGGAGTGCCTGTTCGTGTTCGGGCAGAGTTATTGGGGAATCATTGTGGATTGGCTTTGTTTGGGGAGAGGCAGTTAGTGAAAACTGATGAGCGTGTCATTGTTGCTCCCGTGGTTACTAAAGCTGATGATTCTAATAATTCTGTTTGGATAGAGTTATCTAACACAACTCGTAGCAAGCTTTCTCTGCAGCCTGGTACAAAAGTGATGAGTCTAAAGCCATTCGTTTCTGAAGTGAATACTGTTCATGAAGAGCGAGCTGATGGAAACATTGCAGAAGTACCCATAGAAGACCTAAAAATCAGTCATCTTTCAGAAGATCAGCAATCAGAACTTCTCAGCGTCTTAAGAAAACATCACGTGTGGCCGAGATCTGACCAGTTGGGAAAAACTCACCTCGTCCAGCATCCAATCGATGTTCAGGGAGCTCAACCAATCAGACAAAGACCATTTTGCGTGGATTATCGTCGATTGAACGCGGAAACGAAGAAAGACGCATATCCATTACCCAGAATAGATGAAACGCTGGATGCTTTGGGAAATGCTGCTTGGTTTACAACACTAGATCTCCAATCCGGATTTTGGCAAATTCCAGTGAAACCTGAAGACCGTGAGAAGACCGCATTTGTTACTCAGAATGGCCATTATGAATTTTGTGTCATGCCGTTTGGACTCGCAAATGCCCCAGCAACCTTTCAAAGATTGATGGATCTTGTCCTGTCTGGATTACACTGGACTCACTGCCTTGTCTATTTGGATGACATCATTGTGTTTGCACCAACCGAAGAAGAACACCTGAAACGCCTTGATCTTGTTTTGGGAAGGATGGCAAAAGCAAAGCTGACTTTAAAGACCTCGAAATGTCAATGGTTAAAGAATTCTGTAAAGTTTTTGGGACACATTGTTTCGAAAGAAGGAGTCGCTGTGGACCCACAAAAAGTTCAATCCGTAAGTTCATTTCCTGTTCCTTTGAATAAAACTGATGTTAGAAGTTTTCTTGGCCTAACCTCATATTATAGACGATTTATACCTGAATTTGCAAGACGTTCAAAACCGCTTGCTGATCTTacgaaaaagaaatgtttattcAATTGGACAGAGGAAGTTCAGAAGTCGTTTGATGatttgaaacaatgtttaacaacCACTCCGATTTTGCGTTGTCCTGATTTCAATTTGCCTTTTAAACTTTATACTGATGCATGTGACTATGGAATTGGTGCTGTGTTGGCTCAAGAAGCACCTGATGGAGAAGTGGTTATCGCATATGCTAGTCGTCTTTTAAAGTCATCTGAAAAGAAGTACGCTGTCTTGCAGAAAGAAGCCTTAGGTATTGTATGGTCATTGAAACATTTTTACCCTTATCTTTATGGACGTCATTTTGTCATTGTAACTGATCATAGACCTTTGAAATGGTTAAAAACTATGAATGCTCCAAACAACTTATTTGCTCGATGGATTAGCGAAATTCAAGCCTTCGACTTTGAAGTTGTTCATCGACCTGGTAGATTACACAGCAACGCTGATACACTGTCCAGATACCCGGAAACCGAAGAATCAAATGTGATGGAAATTTCCGAAAATAAATATGGTGAAGTTCAAGCAGATGATAGCTACACTGGTGCGTGGATCAGATTCTTGAAGAAGAACACGAAGCCCTCAGACCAGAAACTAGCAGCgaagatggaaaaagaaaaagatcgaTATTTCCTTGAAGATGATTGCTTGTTTAGAAGATGTTTATCGAAAGCTGGCAAGACGAGAAATCAGTTTGTCGTTCCAAAGACGATGGTTGGACAATTGCTGGTGAAATTTCACGATAACCCGATGTCATCACATCCTGGTTTCTTTCGAATGTACAGAAAAATCCAGCAGAGTTACTTTTGGCCGACAATGAAGACCGATATCAAGCGACATGTGAAGCACTGCTCTGATTGCGCCAAGTTTAAATCCACGAAACCAGCTACGAAGACTCCACTGAAGAACATCGTCACAGAGAAACCGATGGAAATAGTGGCAATGGATTTTGTTGGACCTTTACCAAAGTCGGACAGAGGTAATGTTTACGCTTTAGTCATGATTGATCATTTTACGAGATGGCCTGTTGTTTATGCAGTTGAAAATACAGAAGCTGAGACTGTGGCACGTAAGATAATCGAATTTATTCATATTTATGGTATTCCTGAACAATTTCTAACTGATAGAGGAAGTCAGTTTACGTCAGCATTGATTAAATCGTTATGTAAGCAGCTAGGAGTAAACAAAATATTCACTTGTGCTTTTCGACCTTCATCTAATGGACTAAACGAACATCTAAATGGAACCTTGTTTCAAGGGGTGAAAATGTATGCGTCTAAAAAACCCTCCACTTGGGACGAATATCTCGATGCAGTTACTTTTGCGTATCGGAGTACTCCTCACTCTGTTACTCAACAAACGCCTGCTTTCCTGATGTTCGGTAGAGAACTGAATTCACCATTAGATATGAGACCTCCGACTAGAATATATTCCGAAGATTACGTCAAAATCATGCAGAATGAACGACAGCAAGCATACGAACTCGTTAAAGACTTAGtttcaaaagaacagaaaaggcaaaaactgcATCATGACAAGAATATAAAAGAAATCAatgtaaatattggagataaggtATGGTTACGTGACTTTGTTATTAAAAAGAATACTTCTAAGAAATTTCATCAACCTTGGACAGGACCTTTCGAAATTGTAAAAATTATTGGAagaaacaatgttgatttaaaattgaatgaaaaaaagataaaaagagtTAATATGGAACAAATAAAACTTGCTAATGAAATTGATGGAAATCCAGATGAAATCACTCGTGTTCATGATAAGTTGCGTTCAAGACTTCCAGGTCAGAGACTAGTAACAAGGTACTTTGTTGAGTTTTGTGATGGGCATACACAATGGGTCGATTCCGCGTTTGTTCCTGATAAACTGCTAGAAGACTTCAATGCAAGAAAATGA

Transcript

evm.model.HiC_scaffold_254.2

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P10394	Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1
Q99315	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3
Q7LHG5	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000010 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00665 all species →	rve	Integrase core domain	Domain	Interproscan
PF17919 all species →	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF03732 all species →	Retrotrans_gag	Retrotransposon gag protein	Family	Interproscan
PF17921 all species →	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR041577 all species →	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR005162 all species →	Domain	Retrotransposon gag domain	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR021109 all species →	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR041588 all species →	Domain	Integrase zinc-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984 all species →	PROTEIN CBG26694	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_254.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.