Gene detail

Detailed information of evm.model.HiC_scaffold_26.659 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_26:7063319...7072579
NR annotation: XP_020903728.1, cyclin-D-binding Myb-like transcription factor 1 [Exaiptasia diaphana]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_26.659

ATGAAACCAGATCGAAAGAAACGTCAAGTAGGCCTATCATGGCTTGTGCGGGAAACAAAAGCCCAGAGAGATCGCACACTTTGGCGGGAGGTTGTACATTTGACAAAGAAGGAAAATGCTCCAGTCGATGTTATGCATTTCATCACTGCAGATGATGTACATCAAGTGCAGAGCGCTATATCAAAAGATgacaatgaaaaacaaattctGAATGAGAAAGATCTTTCACTAGGAGCCCCAAGCAGCAGCAGTGATCAGTTTGGTGGCAAGGCTATGGGACAACCATCTGATCATGTGACCGGTGAAAGTCAGCTGATCAAAAGAGACAAAGAAGATATGAGTGAAAAATCAACTGTTGTTGTCAATGAAATAAGTGAATGCAGTTCCCCTTATTTTGTCCCTGTCACAACAGACAATGGAAATAAAACCTCTATGCTTCCGTTAGCTGAAAAAACACTGATTGCTGGACTGTATACCGTTCAGATTTCACAGCCAGATCATAACTTAACTTCAGCAATTCACGCACAGACAGTTGCAAGCGTACAGCCAGTGACGTTTGAAACTCTTCCAACTACTACAGTTTCCTTACAGAGCGCTGCTACTGACAAAGATGACTCTGTAAATCAACAATGGTTTACAACAAAGGATGATAAAAGCTCGATGCAAGTGAAAGGTATGAAATGGAAGCAAGGTATGTGGAGCAAAGAAGAAGTTGCAGTGTTGAAGGAAAATATTGACAACTATTGTAAGATGCATAACATCGAAGACCCAAGCAAGCTGATATTTTCAACACCGAAAGATGAACGAAAGCAGTTCTATCGATCAATTGcGAAAGGTATATCACGACCACTGTTTGCAATTTATCGCAAAACACTTCGTCTATATGATCAAAAGAATTACATTGGTAAATACAcggaagaagaagtagaaaaattGGAagaattgcttgaaaaacatGGACATGATTGGGCAACAATTGGACATTATTTGGGAAGAAGTGCAGCATCTGTTAAAGATAGATGTAGACTGTTAAGGAAGAATAAAAGATTGGTAAAGGATACTCTTTGGCGATGGACAGAGGAAGAGGAGAATATTTTATCGCAATGTGTAAGGGAACAAACTAATACAAAAGAAGGAGAATCAGTGACATCAGGCGTCACGTGGTCAACTATTGCAGAGAAACTTGGTAACAGAACTGAGAAACAATGCAGGTCCAAATGGTTGAATTACCTCAACTGGAAAGAAGCTAATGGAAAGGAATGGACGAAAAATGATGAAGTTGAATTAATAGAAAAAATAGCGAGTACGAATACTGAAGATGACGCTGAGCTGGATTGGACAAAACTTGCTGATCAGTGGCCTAGTGCAAGATCTCCACAATGGCTACGAGGCAAATGGTGGGCAATGAAGAAACATGTTCCAAATTACAAAAATTTGAGCTTTCGTGAAATAATGGAGTATTTGCAGACGACTTACCTGGATGCATTGAGAGTAAAAATCGACAGACAGACAGTAGCATTGGCATCAACATTTTCTGTCAATCCGACATCATTACCCTTACATACTGCTGATCATCTATCAAATCACGTGGCCGCTACTGCTTTGGCTTCAAATCATGCACCTACTGACGTCACAGATGCAGATGCACTTGGGAGTAGCCACTCACACGCATTAATTAACACTTCGACTATAGACCTAACTCCTCTGCAAGGATATCAGCTGCAATTTCAGCTGGCATCATTATCACCGCATCAGCTTTTCATACCAGTTAATTCAACAGGCATTGCATCGAACATTGCTGATCATTTCGTTATTCCTGTTAACATGACATCTGCTTTAATCACGTCAGGAGCAACAGcagatcaacaacaacaacaacaatctcaGACTGGCTTTATTGTCCAAAATGTAACAGATAGTCACGTTGTTGTGAGCAGTTCACGTCATGTTGAACTAACACAAGCCTTGGTTCAAACTGATTTAAGTATTCCTATTCCTGCTGGTGAAATGTCACAGGAGAATCTCACTACAGCCAATATCGAAGCAATGAATGCTAGTATGGTGGTGAGCTTGGAAGAGCCTCCATTAACTAGTCCAACAGTGACACAAGCTTCTCCATCGCATCATGACGCATTTGGTGATACAATGAGCTTAATTTCGGATGATGATAGGAACGAAGATGGAACAAATGAGATTACTGTACCTCGAGAAACATGTAATGTAGATAGTATGGATGCCTTTGACAATGATAACAGTTCAGTGAAAGTTGTTAAAGTCGACCCTATCGTTAGTCACGATTTAGATAGCCCGTtgtaa

Transcript

evm.model.HiC_scaffold_26.659

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DG03	Cyclin-D-binding Myb-like transcription factor 1 OS=Danio rerio OX=7955 GN=dmtf1 PE=2 SV=1
Q66HG1	Cyclin-D-binding Myb-like transcription factor 1 OS=Rattus norvegicus OX=10116 GN=Dmtf1 PE=2 SV=2
Q8CE22	Cyclin-D-binding Myb-like transcription factor 1 OS=Mus musculus OX=10090 GN=Dmtf1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001368 (this species only)
Transcription factor family	MYB · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00249 all species →	Myb_DNA-binding	Myb-like DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR001005 all species →	Domain	SANT/Myb domain	Interproscan
IPR051651 all species →	Family	DMTF1 DNA-binding transcriptional regulators	Interproscan
IPR017930 all species →	Domain	Myb domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46380 all species →	CYCLIN-D-BINDING MYB-LIKE TRANSCRIPTION FACTOR 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000976 all species →	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21625	DMTF1, DMP1; cyclin-D-binding Myb-like transcription factor 1	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.