Gene detail

Detailed information of evm.model.HiC_scaffold_26.697 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_26:7365545...7384239
NR annotation: MCH2046448.1, hypothetical protein [Saprospiraceae bacterium]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_26.697

ATGATAATGAAGTTGCCCGGTTTTCTCATCCTTGCTCTGCTATTAACTACTATTCACGAAGgATATGGTCAGCAGTTGACATTCACAAACTGTAACTCATATGTTACAATAGATCCAGCAAATTATAGCATGGATTCTTCATCTGCCAACCCCCTTGGGTATTATTCTGGTATCCTGCCTTACATGGATGGACAAAAAACGTATCCTTGTGTAACCCTTACAGGGGTGCCAAGTGGTGCCTATATTGAGGTCAAGGGAGAGACACAGACTGCTGGAGCAAGGCTTTGTGTTGGTGATGATAAAACTAAGAGAGTATGTGGAAATggACAGATGGAAACTTGTTACTCCGCTCCTTCAACAACTGTCAAGTTTGCATTTTATTGTGATTCTGCTTGTGAACAAACTGATATTAGCTTTTGGTATCGTTTTGTTACAAGTGAGGCGAACCCCTCTGATCAATGGTGTGAAGGCAGGCAAAGTGACAATTTCCCTTCTTCTCTCGTGGTACCACCAACAAATATTATTACAGCTGCAGTTAAAACCACGCCAGCAGTTTCCGCCCAGTATGTTTCGCAAAACCATGAGAAACCCAATCGTCCAAACCCTGTTTTTGCAAGGGAAAAGATATCATCTGTAACAACGATGAGAAGTTTTCTACTGTATGCAAGAATGCAAGACCATGTTTTTGCAAGAGAATTTTTGACTGGTAACAACAATAATGATCATCGCAACTTGAAAATGGATTCCGGGTATAAATCTTACGAAATGGACTCTTTTGATGATAGATATTCCCCTCGCCTGTTTCATTCCAAGAGTTTTTCTGCGAAAGAACACAATGAGAGTGgagctgtcctgttctcaactctaaaGAACAGATTTCGTGGCAACGTCAGAAGAAACACTGTTCACTCAAGAGGCTTCGCAATAAAGATGCAAGACGAAGAAGATTTTGGTTCTGTTTATGCACCAACCCTAGAaaaatctgagaaaaacccTGAACTGAGAGAACATCTGTATGAAACCATAGAGGACATCATTGATAAAACACCAAAAGAGATGCCATCATTCTTGCTGGAGATTTCAATGCTAAAACGGGATCAGTGTCATAGGACAACATGGACTGCACCTTTCCGCGATTTCATCACGAAAGATGGAGAAAAAAGGAGAAATCCCATACGAAATCAAATCGACTATGTCATCACTCGAATTGAACATAGACGCTTCATCAGAAACTCCAGATCATATGGTGGAATCTCAACAGAAACTGATCACAAACTTGTGAAaactgaaataaattttgaatgGTACAAACACAAACCTTCTCGTCAAGACAAGCAAACGAAAATAGAGGTAGCAGGATTTCACGACAaggaaaaaatcaagaaatacaaatttgaaattaccaaaaacatgaatgaaataaatgaacaaacatCAGGacaagaaaaatggaaaatgatatGTAAGGTGACGAAGGAAGCTGGAGAAATTGCACTAGGAactaaaaagaataaaaagaaacacAATGATCCAGAACTAGAGAAATTAGCTGAACAGAAACTTAAGATCAAACTTGACATTGAAGCTTGTCAAAAACAAGaacgaaaaaatgaaaaaAAATTGAAGAGGACCAACTGGAATCAAAGCTCAAAagtattgaaaaatgaaaatgactcAACTCGATATTTTGCTGCTGTTAAAGAATTCAACAACAGAAAACCAAGAGAGAATCTATGCGTCAAAGATGAAAACGGAAAAATAGCTGCATCTGAAGAAGAACAAGTCGAAATTGTgtcaaaatatttcaagaaaatgctTGGCCCTGAAAGCTCAAAAGACGACTATATATATTATCCACCAAAAGAAATGACACAACCTTTCACAAAAGAGGAAATAACTAGAGCAgccaaaaagttaaaaaatggtAAAAGTGCTGGACCTGATGAACTAGAACTTGAACTAATAAAGTATGCACCTGAGGAAATACATCACGAAATTGCCAAAATCTTCAACATGGTTGCATCAAAAGGAGAAGAAGTAGCAGAACTTGCTCTTGGAATTTTAAGACCACTTCAGAAACCAGGAAAATCAAAAGGCCCCACAGAAAACTTACGACCAATAATACTCTTATCTGTTCTCCGAAAATTACTCACCATCTGTATGATTGACAGAACATGGAGCCGCTTAAAACATCAAATACCAATTGAACAAGCCGCATACCAACCGGGAAGGGGAACAACAGAGCAAGTATTTGCAGTAAAACTTTTAGCAGAAAAGGCAATCACTTGCAGTGACTACACCTTATATTTACTTTTACTAGACATGTCAAAAGCTTTCGATACGGTAAATCGAAAAATCCTGTTTGAAGAACTAGACGAAATACTTGATGAGGATGAGCTACACATGCTGAGTATTCTTACAAATAAACCTGAATTGAAAGTGAAAATAGGCAACACTGTTGGAGAAAACTTCACGACAACTATTGGAATAATGCAAGGTGATTGTTTAAGTGCTATCTTATTCATCCTGTATCTTGCAAAATGTCTCAACAAACCAATTAAGACGAAAATGAAAGGATTTCTAATAAAACCAAAATATGCTGATGACATAACATATGCTGGAACATCCAAGGCAGAAATCaatgaattagaaaagaaaatcCCACAGCTACTCACAAATTATCAATTAAAAGTCAACATAGGAAAAACCGAAAGATATCAAATCCCAAAACCTCCACCACCTCCACCTAAAACACCTACATTAGAAACATTACTGAAACACAAAGATGATAAACCTCGTTGGTCTGATCTTGATTGGTTAACATACAAAGAGCCAGTGAAAGATGACACCCCAAACTGGAAAGAATGCAAATTATTAGGTAGCAAACTTGATACAGAGGAAGACATCAAAAGAAGGAAAATTCTCACCCTGGCAAGTATAaaaaacatgaatgaaatatataAATCAAAGCACATTAGCCTACAAATGAAGATACGAACTTTTGAAGCATTCTCAGCATCAGTTTTCTTATATAACTCAGAACTATGGACCCTAACCAGCAAACGAGAGGAACAAATCGATACATTCCATAGAAGGTTACTTAGGAAAGTCATTGGAATCTACTGGcctaaaacaatttcaaatgaaaagttATATGAAAAATCTAACTCTGAACCATGgagcatcaaaatcaaaagaagaaGACTAACCTGGCTCGGTCATGTACTAAGAATGAAAGATGAAACACCTGCAAGGAAAGCTCTACAAGAATGCTTGAAACCTgcaaaaaggaaagttggaagaCCACCTCTAACATGGCTGAAAAAGATTGAACATGACATCAAACCACTAAACATAAAAATCAATGATGAATCAGCAATAACAGAACTTAAAATGATGGCTGATGATAGAGATGGGCCTAAATTGATTgctttttactttctttcagaTTCCATACACAGTCATGGACCAACGCTCAAGGACCAAGAGCATATGGTGCAAGatttgaaaaaggaaaattttgatCTGAAGCTGCGGCTGTATATGGAGCAAAAGAAAAACGAGTCTTCAGACAGCAGAATCGAAGAATATGAACGTCAAATAGCTGAACTGTTAGACAGGTTCGATGAAGCGCAAAGCCAAACAAATTTACTCCAAACTGATTTGAAAGAGACTCGCGTAAGAGAGAAAATGCTCATTACAAAGAAGAAACGACTCGAGCAGCAATGTGCAGAGCAGactgaaaaaattcaaaaccttTCAAGTGATTTGTCCCAAATGAAATCactaagtatgcaggatttatCAGTTGTGAAACACAGCACTCCACTAAGACATGCCAAATCAGAATTTCAACTCACACCTCACGATGAAGACGAGGCCGATGATGATATCGAGGATGAGGAGTATGGTATCCATGATGACAGCAAACCATTGTCTCCAGTTCAACCAATGAGAAGAGAGCAATCTACAGAGTCAAATGAATTCAACTTCGATGAAGACACGACACAAGGAGACCAAACCTGGAATGCTAAAGTGAACGATAGGACTGCCAGGGTACAGAATATTACAATTCACCAAAGAAATAATTCAACACGCAGCTATAATAATCAATACACGCCAGTGAAAAActtttataattttgaaataccCGATGGACGATCTGTGGCAGCAACTTTGCCTCGTACTGCAGGCGAGGCTGATAATATTGGCATCGTCAGGCCGAATAACTCGAGAATTGGTATTGATGCAAATATAAATACATATATTgtggaaaaagaagaagaaaaaagaaaagaagaagaaaggaataATGAGAATTTTTAA

Transcript

evm.model.HiC_scaffold_26.697

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001120 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF07989 all species →	Cnn_1N	Centrosomin N-terminal motif 1	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR012943 all species →	Domain	Centrosomin, N-terminal motif 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR39297 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005815 all species →	Cellular Component	microtubule organizing center	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_26.697.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.