Gene detail

Detailed information of evm.model.HiC_scaffold_262.26 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_262:197972...216492
NR annotation: XP_047125274.1, synaptojanin-1 [Hydra vulgaris]
Species abbreviation CQUIN · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_262.26

ATGATAATAGGGAAGAACATTTCATGCTACAAGAGAGTAACTGGAAAAGATGTTTCAGTAATCATCGATCACAAACTCAAAGATCAATCATTGTTGTTTGAAAAAGGAGTGGTCGCAGAACTTGGTCTCACAGAAACAGATGAGATTAAGAAGCTGTACACCAAAAGTGCTGACTTTTATGCCTTTCTTGGAGCACTCAAACTGCATATTGGAGAGGAATACTTTATCTTCCTGTTCTTTGTAAATGGCTGTGTATCTGTTGGCAAAATAAAAgaccatgaaattttcaagataaCATCTTGCTCTTATGTGGCGTTGCAAGAAAGTTCTGAAATTGAGTCAAGATTGtTGATTGTGTTAGATGACAATGAAACATCTTATGTACAAACAAGAGGGTCAGTACCTGTATTTTGGGAACAACCAGGAGTTCAAGTTGGCTCACACAGAATTAAATTTTCACGAGGATTCGAGGCGTCTTCTCCTGCATTTGACagGCATATTGCAAGTTTGAAGGCGCTATATGGCTATCAACTTCTTGTTAACTTATTGGGAAGGAAAGAAGGAGAGCATGCTCTTACTACTGCCTATAAGGATCatttgaagaattcaaaacatAGTTTCGACACGCATATCATTTTATtcgattatcattatcattgtcgaGGTGGAAAAACGGAGAATTTGCAGAAACTGATCGAAAAAGCTCATGCATCGATTGAGAATTTCGGATATTTTGTTTACAAAGAGGATCACATTGAGCACTCTCAAGTCGGAACAATCCGAACGAATTGCATTGACTGTGTCGATAGAACAAATGCTGTACAGACAAAGATTGGATTAACGGTTTTGGTAAGCCAACTGGAAAGTTTGGGCCTTACAGACAAAACGAATATATCGTCGAGATTCGAAGAAGTGTATAAGAACATCTGGATGCAAAATGGTGACCAGTTGAGTAAGCTATATTCCGGAACAGGAGCAATGGACAGTGGCGTCAAAGGAACGCTTTCAAGTAAATTCCACGATGGCGCAGTGTCAGTAAAAAGAGCAATTGTGAACAATTTCTTGGATGGAAGCAAACAAGAGGCGATTGATATTCTTCTTCTTGCATCTCCTTCAATATTGAAAGAAATGTGCTCACGTTATGAAGAATACACAAAAACATCGCAGATCAGAATTTGTTGTGGAACTTGGAATGTCAATGGTGGCAAACACTTTCGTAGTATCGCATATAAACACATGTCGATGCATGACTGGTTGTTGGATTACCACACGAAAGCACCTGAAGGAATTATCGATAGAGACGGAGATTTTAACCAACCTCCGGATATTTTTGCTCTTGGGTTCGAAGAGCTTGTCGACTTAAATGCAAATAACATCATATCAACCAGCTCGACACAGAAAAAGGAATGGGGATCAGAACTCCAGAAAGTTATATCACGTGATCAACCTTATGTTTTGCTAACTGCAGAGCAATTGGTTGGTGTTTGTCTCTATGTATTTGTACGCATACATCATCTGCCCTACATCAGAGATGTAGCAGTCGACACTGTGAAAACAGGCCTAAAAGGAAGCACAGGGAACAAAGGAGCAGTTGCCATTAGATTGTTGCTACATTCAACATCAATTTGTTTCGTCTGTGCTCATTTAGCTGCAGGACAATCAAACGTACAAGAaagaaataataattatttcgATATTTCAAGAAGAATTAGCTTTCCAATGGGTTCTACGCTGTCGTCTCACGACTATGTATTCTGGTGTGGTGATTTCAATTATCGAATCGACTTGCCGAATGATGAAGTCAAGCAATTGGTTGTAGATCAAATATTTCGTGGTTTTCAAGAAGGTCCAATAAGATTTGCGCCAACATATAAATATGATCTATTCTCTGATGATTATGACACAAGTGAGAAAATGCGCACCCCAGCATGGACCGATCGTGTTCTATGGTACAGAAGGAAATATAAAAAACGAGAAAATGATACAATTAGAGAGAACAGTGCTGATTCAGATGATGAAAGTCCGAAAAGGGAGAAAACTAATGCAGcCATGATTGAAGATATATGGAATCCAGGACGAatcctttactatggaagagcTGAATTAAAAACATCAGATCACAGGCCTGTGATAGCCGTTGTTGAAATCGAGGTACAATCAGTAAACCAGCAAAAAGTTGCGAATATTCATAACGAAGTTATAGAATCATTTGGACCAGCGAATCCAACAATTGTTGTCAAAATTGATAAAAGTGTACAGGATGTACCAGATGATGAAGAATTGGATATGAATGCTGCATTAGAGGCATTTCAACAGTATGGAGACATTGTTCTAGTGAGGGCTGTCGATGACGAAATTTTATTTACATACGACAGTGGGAAAAGTGCATTGGCATCACTCGAGCACAATGGACAAGACATCGATGGCTACGTGATCGAAGTGACTTTGAAGAACTCAGATACATTGGTAAAAACAGAACCATCAGttcattcattgatttcattggaTTCGCAACCGGAAACCACTGATAACGAAGAAGGCAATTTCAGCCTAACAGAATTGCTCAGCTGCTCACGAGAATGCCGTTCTGGGTCGTTGCTGCTACCGGAAACCCTCGATCTACAGACCGACTTCTTAGACGATGATGCAAGATCGGTGGATGATGCCttagatgatggtgatgatgatgacgatgatggtgacgaGGAAGAGTCTGAAGATATCATACagaaaagacaagaagaaatgattgacagcgacgatgaagaagaagcaTTACAATCTTCAAATAACCAATCAAAAATACCAAACCGACCCACAGCCCCTCCACAGCGCCCGAGTGCTGCCCCACAGCGTCCAAATCCTCCACCACAGCGTCCAACGCACCAAGTGCTGCGCCGAAGAAGCCTCCGATCAAGCCCATCATTTAGTGAATTTGACCCCCTGTCAAACCCATCTGATGATGGTGCAAAAGAGGCTGCAAGTAAACCTTCTCGACCAGCAAGACCAAGCAACGTTCCAGTGAAACCGAGGCCACCAACGTTtgaacagaaaaaagaagaaaatatcaaaGAGAAGTTAGAGGAAACTTTAGCGAAACCGCAGGTTCAAGAAAGCAGAAATGAGGACGATGTCGACCAAGAAGATAACATTAGCACTCCATTTAATGTCACCCATTTACTTCATGTAAGTGCTTCAAATGTCGATGAATTTTTAGCGCAGATGTCGCAAACAAAAGCAGCCTCTCTTCCAGGAAAAACAACTTCTATCCCATCAAGGTCAGAGTCTGTGAAAGCAAAGCGAGCAGTACCTGAAAAACCAAAATTGCCTGACGCTGGATTGAGAAGCGAATCAAGCTCGAAGCTGTCGGATGTCAAAGAAGCGAAAGGTGGCGAGGAGGACATGTTGGCAAGGCCTGTACCaccaaagagagaaaagaaaatgGCACCAATCCCTGTCCCTCGAAATATTGAAAAGCACAGTGATGACATGTACTCtgttattgatgatgatttgaaaaatgaCGTTAAGAAACCCGAGTCTAAATTAGAGGATGAAAGTGATTTAAAAAGGGCGCCTCCAAGACCAAAGAAACGACCCGTGTCTGTTGCAGTGGTAGAAAGTACCTCAGGAAACCCCAAGGTAAAAACTTCGACAAGTGATAACTCAGAACGAGGTGGATTCAATAAGGCAGAAAGTATTGACTATCATCAACTTCCTAGTGTTCCATCCCGAGAAGCAGGTGATGTTAGCGATTTGTATGCTACTGTTAATAAACCGAAATCGAGGCAGAGCCAAGATGCTGATCTCGATGATGTCACTGTTGAAAATCAAGTGTCGACAGACGGTAAACCACGTCTTCCTCCAAGGAAGTTTACGTTACCTGAGACCaatagtgataatgatgataatgatgatgggaGATCAGCAGCAGAAGAgcttgcaaaatcaagtcagGTTGAAATTACTGAGCCTTTAGAGTCAGATCATGAAACTGACGGGGAAATTTCGTGCAGAAAATTCAGCAAGACGAAGCTGATGATAAGATACCACATGAAAGCAGTTCTATTCCATTGA

Transcript

evm.model.HiC_scaffold_262.26

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O18964	Synaptojanin-1 (Fragment) OS=Bos taurus OX=9913 GN=SYNJ1 PE=1 SV=2
Q8CHC4	Synaptojanin-1 OS=Mus musculus OX=10090 GN=Synj1 PE=1 SV=3
O43426	Synaptojanin-1 OS=Homo sapiens OX=9606 GN=SYNJ1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004270 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02383 all species →	Syja_N	SacI homology domain	Family	Interproscan
PF08952 all species →	DUF1866	Domain of unknown function (DUF1866)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000095 all species →	Domain	CRIB domain	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR046985 all species →	Family	Inositol 5-phosphatase	Interproscan
IPR015047 all species →	Domain	Synaptojanin-1/2, RNA recognition motif	Interproscan
IPR002013 all species →	Domain	SAC domain	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000300 all species →	Domain	Inositol polyphosphate-related phosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11200 all species →	INOSITOL 5-PHOSPHATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004439 all species →	Molecular Function	phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	Interproscan
GO:0046856 all species →	Biological Process	phosphatidylinositol dephosphorylation	Interproscan
GO:0048488 all species →	Biological Process	synaptic vesicle endocytosis	Interproscan
GO:0016791 all species →	Molecular Function	phosphatase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20279	SYNJ; synaptojanin	EC:3.1.3.36	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.