Gene detail

Detailed information of evm.model.HiC_scaffold_262.6 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_262:48114...51556
NR annotation: XP_022790066.1, double-stranded RNA-specific editase Adar-like isoform X2 [Stylophora pistillata]
Species abbreviation CQUIN · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_262.6

ATGGACGCTGTAGAGCATGCGGATGGTCTGGCAACCTTGCCTGTAGATGACAGTCTAGAATCAAAGATTCTCAGATTTCTGCAGCAGAAATATGAGTCAAGAACTGCTTTACAAATAAGCAAAGGCATTGGCCTCAAAACAGCAAAGCAAGTGAATCCTACTCTTTATGCCTTGGAAAAAAGAAATCTTGTGCATAAAATAACCAATAACAAGAAAATTGAATGGCAGGCAGTAGATCAGGATTATGAAATGATGCCTCCTATTGAGGATATTGATGATGAAGCATCTGGTAATGAGGCTGGATCTGCCTTTGGACACATTGAGGAAGGTGCTTCCACCATATCAAACAAAgctgaaatgtttgaccctCAACAAACAGCAGAGAGCACGGAAAGTGAGCATCCAATTCATGAGCATGGCCATAAGAGACACTGGTCTGAAGCTGATTCCAGTGATGAAAATATAAACCCCAAACATGTATCAGTTGCTAATGATGATAAACAAGTTGAAGATTCTCATATGCCAATGGGCAATGTCCCAGTTCAACCCAGCTCAATAAGCAGTTTGCATTCTAAAAGCACTGCTGATGCCACCCACAAGGCACCAGCATCAGGCATTGGTAGGGGAGGCATCCTGCAATCCACTTGGGAATCTCAGCAACAGCACAGACCAACCACTGGTATGTCAAACCGATCCCCTGAGAAAGGACTTACCTCCCCTAAATGCATCCAGCCAGCTAAGATGTCCCACTTGCCAAAAGCCCCCCATGAATTGCTTCCTGCATCTACCCAAGTATCAGATGACAATAAGAAAACTAGCAATCTGCCAGTCATATCAGATTATTTTAGTTACAAAGATAGAGACTATGAGAAGCATCCATATGATCATGAAAATGCATCAGGGTATGGTCAAAAAAGCAGTCCTGGGGTACAACACCAAAGATATATTCAAAATCAGAGTAGGGATCATGATTCTGTTCATCAGAATCAAAGTAGGTTCAGCAGCCCATTCTCAACTGATCAAAGAAGTATGTCATACGGACAAAAAGCACAACATCAGTCTGTCCAGCAAGATCATCCTCGCTTGAAGCCATTAATGGATGGTTTTCCAGAAGATAGATTTGACAGCAGTAGTATGCAAGGTAATGATGAGGAGATGATTGATAAGATTGTTGATTTCCTGAAGCAATTCCACAGACCTGTTGCAACATTAGAAATCGCTAAAGCTGTAAACAAAGGCAAGAAAAAGGAAGTGAATCCGATTCTGTATGAGATGCAAAGAAGAGGCATCATTAACAAACATACCAATCAACCACCCTCTTGGAAACTCGGCTCATCTTTGCCCACTTCAAGTCAAAAAGGAAGAGAATCCCCCAGCCCTAATCCTATTCATCCATCACGTAGTAATGTCCACAACCAATCTCTTGCATCTGACTCCGCACGTGGTCAACAAAGCTCTTTCCATCAACCACAACCAGTAAGCCAATTTGCAAGGCAGTTATCTTGGCCAAGAAATGCAGCTGGAGTTGCACCCCAAACTTCACTAAGCAATGTGCGAAATCAGCATATCAATACAGATAGATCTTTGATGCAACAGTCACATCCTATGCCATCATTGCCAGGGCAGAGGGGTCCTTCTAGCATGCATTCAGCTTGGCAAAGCAGGGATGCTGCTAGGCCAACATCCAACCGACCAGCAGCACCAACGGAGATGTCCTGGCAGAGTACAGATATAGTCAGATCAATCCCAAATCGACCAGGGGCAGCATCAGCACCATCAGAGTTATCTGGAATCACATTCGCTGCACTCAATAAAAACCCTGTTAGTGCACTGAACGAGTATGCACAGAAGAACCAGATGGAAATATCATTTGAAGTGCTAAATGAAGCCAAAGGTGGACCCAACAAGTTTCTGGTTGCTGTCATGATGAACGGAAAGATGTATAATGCAGCATCGGCAGGGAATATGAAGGATGCCAGAAGAGAAGCTGCAGATCTGGCATTACGAGAGATTCTGTCTCAACAAGCAGCAACACGCGTTCAAAGCAGCCCCAATGTATCTCAAGCATTGACGCATTTTGATAGAATAGCAATGTTAAGTCATCAAGCCTTCATCACCATTTCCGCAGGCGTTCAGGAGAATTTTGCTGGAAGGAAAGTCATTGCTGCGATTATAATGAAAAGCTATAGTGATAATGTTGGCAAGGTTGTCAGTATTGGGGCTGGAAATCGATGTATCACCGGGGATCGTTTGAATTTGGAAGGAAAAACAGTGAATGATTCACATGCTGAAATAATATGCAGAAGATCCTTTCTTCGTTACTTGTACTCAGAGATCGATAACTTTTATTCCCAGAAAGGGTCGTTGTTTGAAGAGGGAGGATTAAACGGCCGTCTGCAAGTGAAGGATGGCGTAACGTTTCATTTGTATATCAGCACAGCACCATGCGGCGATGGAGCCTTGTTTTCACCACGAGACTCTGCTAGTTTGGATCCAAGTGCCGCAGTCAATGCCCCGAGAGACCATTCACCGGTCTTCAGCTCCAAACAACAAGGTTTACTGCGGACGAAGATCGAAGATGGAGAAGGAACCATCCCTATCGATCCCTCAGATGGTCCGCAGACTTGGGATGGCATTGTAATGGGAAAGAGACTGCGTACAATGTCGTGTACTGATAAAGTTTGCAGGTGGAATATTCTTGGTTTGCAAGGAGCTTTGCTCAGTCACCTAACTGATCCGATATATCTTGAGTCAATAACCCTGGGTTATCTTTATGATCATGGGCATCTGTCAAGAGCTGTTTGCTGTAGATTACAAAAACAATCTGACGTTGATAAGGATCTCCCTATGCCATACTTCTTGAATCATCCGTGGTTAGGACGCGTCACTGCTTATGATCCACCACGCGAAACAGAAAAAACCAACAATCTCAGCATCAATTGGCATCTGGGATGCAAAGGTGTGGAGGTGACTGACGGAAGAGCTGGATGCTGCTTGACTCGAACTGATAACGCCCCAACTCCATCGAGACTTTGCAAGGCGGAACTATTTCAACATTTCAAACGGGTCTGCTCAAAAGTTGCGAAATTGCATCATTTGATGGACTTTGATACTTACAGAGAGGCGAAAGAAGCTGCCCAGAGTTTCCAAACTGCGAAACAAGTCATGAACAGACAGTTTACTAGTTCAAAGTTTGGTAATTGGGTGAAGAAGCCGAGAGAATTGGAACTTTTTGATGTTTCGAATCACTAA

Transcript

evm.model.HiC_scaffold_262.6

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P55265	Double-stranded RNA-specific adenosine deaminase OS=Homo sapiens OX=9606 GN=ADAR PE=1 SV=4
Q99MU3	Double-stranded RNA-specific adenosine deaminase OS=Mus musculus OX=10090 GN=Adar PE=1 SV=2
P55266	Double-stranded RNA-specific adenosine deaminase OS=Rattus norvegicus OX=10116 GN=Adar PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001415 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00035 all species →	dsrm	Double-stranded RNA binding motif	Domain	Interproscan
PF02137 all species →	A_deamin	Adenosine-deaminase (editase) domain	Family	Interproscan
PF02295 all species →	z-alpha	Adenosine deaminase z-alpha domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR042371 all species →	Domain	Z-binding domain	Interproscan
IPR014720 all species →	Domain	Double-stranded RNA-binding domain	Interproscan
IPR002466 all species →	Domain	Adenosine deaminase/editase	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10910 all species →	EUKARYOTE SPECIFIC DSRNA BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003726 all species →	Molecular Function	double-stranded RNA adenosine deaminase activity	Interproscan
GO:0004000 all species →	Molecular Function	adenosine deaminase activity	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0003725 all species →	Molecular Function	double-stranded RNA binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006382 all species →	Biological Process	adenosine to inosine editing	Interproscan
GO:0008251 all species →	Molecular Function	tRNA-specific adenosine deaminase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_262.6.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.