Gene detail

Detailed information of evm.model.HiC_scaffold_262.69 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_262:801422...816410
NR annotation: CAH3027103.1, unnamed protein product [Porites evermanni]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_262.69

ATGAGATTTCGTCACGAGGTGAAAGTATCCGAATATCATAATAAGAAGGCACTTCCGAGTTTCAATTTACTAAAGCCATGGGAAGGTAACACACTCAAAGAGCGTGTTGGTGCCACTGTTCCAGCCCCTGAAGCCTCGTTGCCAGCTCCACGTGAAACCCAAATCGAGGCTAAACCTGAGAATGAGGCTGTTGTTAGTAAAACGGAGCATGCGACTAGCAACATTGTGACTTGCAATACCGAAAATATGTCGGGTCAGCAGAACTCAGTTCAAACCCAAGTTGGAGGGGCACAGATTTTTCCAGCTGGGGGGTTTATTCCAACAAGTCTCCCAAGAAATGCACTATACAGCCCTTCATCTCCGCATTTGCTACCAGTCGTTCAACATATACAAGCAGTAGATTTCATGGGTCGCCCTATACCCCAATCAATTTTATGTCACCAAAACCCACAGCCAATTCAATACATACAAGGAATACCATACTATTCTAATGGACAGTATTTCATTCCTGTACACCCAAATCTAATCACTCAACAAGCACAGCCTGGTCTTATAAACCCTGCTATAAACCTTGGACATGATAAAGCAGCCATTTTTACCCAGCCTCACAATGATAATACGAAAAACGCCCAAGATGCGGAACAGCAAATAACGCAACTACGTAAAAACGTTCTTACTTTGAATCAAGATAAATCAATAAATAGCTTAGAGGGTCATCATAATCAGACTACGGAAGCTGAAGATATCAAGGCTAAGAGTGAAGCAAAGAACGATACCACTTCTGTTAATGATAGCAGTAATGCCATTACATGGGTCGACGCATTCGGAAAGAATTCCGCGAAAGTAACGCGAGAGAATTCAACAGACCAGCAGAAATCAACGGAACATGTAATGGAATGGACCGAAACCGGAAAGCAACAAGAAGTGAATGGATTTCTTTCCGGTTCAAATACTTCACCACTCAGCTCTCCTCTCTGGATGAATAAGCCAATGAGCATTGATCAGGTTTTTCCGGAAACCGACAGAGACCGTATGCGAAATATTACTTGGGTCTTACAGCCCGGAACAGATTCTTCAACAATTGAAAATACTGGACAAGTAATTCCGGATGGCATTCTCGGTAAACCAACACGGCAGGGCTTTCTTTCAAGTCATGATATTGGTGTTTACCCCCGTCCAGATCAGTTCATTAGACAAGAGCCACAGATATGTAGGTGGACAAGCAAGGTCGAGGTTACAGAAGACGGGAACAAAGAAATTATAGTCAGCATGTGCGCAAGACAATTCCAAACCGTCGAACAAATCGTCTATCATATTGCAGAAGATCATTTGAGTAATACCGGGCCAAGCACGACGGAGCTTCATTTTTGCCGCTGGAAAGAATGCCCCCGAAATGAGATTCCGTTTAAAGCCAAATACAAGCTGATTAATCATATACGCGTTCACACTGGCGAAAAGCCGTTCCACTGCTCGTTCGCTGGATGCGGAAAGCGATTTGCAAGAGCGGAGAATTTGAAGATTCATAAGAGAACACATACAGGTGAGAAGCCATTTATCTGTCAAGTCGAAGGATGCACGAGACGATTTGCCAACTCAAGCGATCGAAAGAAACACATGCACGTTCACCTATGCGAAAAACCATACACATGTGTGATAAATGGTTGTGGAAAGACCTATTCACATCCAAGTTCATTGAGAAAACACATACGGAATCACGAAGGAAGCGAACTGATTCTAGTTGATTCAAAACATTTGCAGGAAATGCAAAAACATAATGAAGACCCGACCCTAGAGAAGCATTTCAAAGGCCACAGAGATGCAGTCACAAGTGTGGACTTCAATCCAAATATGAAACAGTTAGGAAAGGAGAGAGTACAGTGTTTAAGGCTCATACTGCAACTGTACGTAGTGTTGACTTCTCAAAAGATGGGCAGTCACTGCTTACCTCTTCAGATGACAAGACAATCAAGGTTTTCAAACGATGGAAGATTAATTGTGTCTGCAAGTGACGATAAAACTATCAAACTGTGGGACCGTGGCAGCAAAGACTGCGTTCATACATTTCATGAATATGGGGGATTTGTCAACCACGTCGAATTTCATCCTGGTGGAACTTGCATAGCAGCTGGTGGCACAGATAATACAGTCAAGGTCTGGGATGTGAGGATGAACAAGTTACTGCAACACTATCAAGTACATGGTAATGCTGTTAACGGCTTGTCCTTCCATCCATCTGGCAACTACCTTATTACCGCTTCAAGTGACACCACTTTGAAgATTCTCGATTTGTTAGAAGGAAGACTGTTTTACACTTTACACGGACACCAGGGTCCTGCAACAACTGTTACATTCTCTAGAAATGGGGAGTTCTTCGCTTCCGGCAGCACTGATGAGCAGGTTATGGTTTGGAAAACAAGTTTTGATTCAGTCGATTACAGTGAAGTTCTCAAAGCACACAGAAAAAGAGTCGCATCACCTCCCATCTCTCACAGTCATGATCCGCCACCAAGGACACCACCAACTCCAACAAGAACTAAAGATATTCGTGCTACGAATGAACCTCGCGACATGACATCAACCGATCCAAGCGTAATGGAAGTTGGCCCAGCTCTCTTTTCAATTCCGCAGCCTGATGGTAGAGATTACTCGAAATTCATTGGCGTTGAAGCAAAGGAGAGTACTGTTGGTCAACCCCAGACAACTCCATTGGAGAGGAGAGATATTCCACCTCAATTGGCAACAACGCTGGAGCACATCGTTAGTCAACTGGATGTTATCACACAGACGGTATCAATCCTGGAACAGCGACTCACGTTATGCGAGAACAAACTACGTGAATGTTTGGACAATCAGCAGAAAATTACTTTACAGATAAGACCCAATGAATAA

Transcript

evm.model.HiC_scaffold_262.69

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9IB89	Zinc finger protein ZIC 5 OS=Xenopus laevis OX=8355 GN=zic5 PE=2 SV=1
Q9YIB7	Zinc finger protein ZIC 2-B OS=Xenopus laevis OX=8355 GN=zic2-b PE=2 SV=1
O73689	Zinc finger protein ZIC 1 OS=Xenopus laevis OX=8355 GN=zic1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005223 (this species only) · gene tree & orthology
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096 all species →	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR043359 all species →	Family	C2H2-type zinc-finger protein GLI-like	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45718 all species →	TRANSCRIPTIONAL ACTIVATOR CUBITUS INTERRUPTUS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000977 all species →	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16482	POC1; centriolar protein POC1	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.