Gene detail

Detailed information of evm.model.HiC_scaffold_27.147 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_27:2224671...2247777
NR annotation: XP_022792657.1, nuclear pore membrane glycoprotein 210-like [Stylophora pistillata]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_27.147

ATGATGCACACAAAGTCAATAAGGCAACCTTCAGCTACAGTGCATGTTGTTGAGCCTGCATCACTAGGTTTTACCGTCGTTCCTGGCAACGCATGGGTTCTCGAGGCTGGAAGAGAGTATGGTATTACAGTGGAGATCTATGATGCGAAAAAGCATAAGATTTACATTGCAGATAATACAGTTCTCTCCTCGATGTTTCCAGAAGAATTCTTTCAAATGGAATTGAAGTCTGTGAATAATTCATATCATTATGTAAAAGTATTGAAGTctggaaaagcaaaaataaatgcaacaCTGACTGGAGTGAGGTCTGGTGATGGCAAAAAATTGCTGAAACTTAAAACACCTGTTTTTGGTGAACAGCAAGTAGAAATTTTCAACCCAATAAAAGTCGAACCTGAACTTGTCATTTTTCCTTGGGAGCCAGAGATTGCTGCAGGAAAAAGTTACAAAATACAGTTCAAGGCTTCTGGAGGTAGTGGCAGTTACCATTGGAGCTCGCAAAACTACTCTATGACGTCAGTAAGTAATAAAGGACTTGCAACATCAGGAAATGTCATTGGTTCAACTAAGATCAAAGCAAGTGATGTGAAGAACGTGTTGCATTATGGGGAAGCAACTGTTATTGTGCTCCAAGCTGATCGAATGAATTTTCTGCCATCTGCTGTAGAAGCTGAAGTTGGGAAAGAATTAATTTTGCCATTATCTGTAGCTGCATATGTTGTTATTGGTGGGAGAAGAGAGCTGAAAGTATTTGAAGACTGCAGTCGCATGCCTTTAAAGATATCCTTTTCAGATGACAGCATTTTCAGAATAATCGACTCCTCTGTTAAGCATGACAATGCTGCAAAGGGATCTTGCAAAGCCTTGCTGGTTAAAGCAGTGAAGACCGGTTTCACAATGATAACTGCCACCTACTACAATGGAAACACAACTTTGAAGACCAGTGTTACCATAGGAGCCTATCCACCTTTGGAAGTCATAGACCCATCAGAAATCGCTACTGTTGCTCTTGGGTCAAGCAAAATTGTCGCATTGGAGGGTGGCCCACAGCCGTGGATATTGGATGCTAGTGGTTTCTATGAATCATcCATTGGCACAAGAATAGATAAGCTTCATTACTTCAAAGTTACATGTAAGCAGATTACTGGCGAGCAGCTTCTTGTTGGACAAGTGGGAAACAAGCCTACAGCGAAGAACCAGTTTCCAGCAAGTTCTGTAGCATCACTGAGATTTCTGTGTACTCCACCTGGCTCTGTTTCTTTGCATCCTGATATCGTTTTGCCAAATATTGATGGACAACAAATGACTTTGGAGAGCTGTAAAGATTCTGACAAAAGAGTgtTTCGTAATAACCGTGAGCTGTTGATACTACTTGTTGTGAGAGATGCAGGCGGTCAAGTATTCGACAATGCAACTTCACTCGATATCAGATGGTCTTCAAATGACAATAACCTCGCTAGAATTCTCCATAAGCATACAACAATCCAGCAAATTCACAGCAATTATACTGCTTCTGGTTATGAAAGAGGTAAAGTTAGTAGAATACTGATAGTGAAGTACTATGTATTCATTTTACCATGTTTAATTTATCTTCCTCAGGCTACCATCTACCCACCAATATCAGGCAGTTTGGAACTTCTGCTGGTCAGAGAAAGACAGATTGTGCCCAATTCTTTGGTTCTGTTCAACCATCCTATGAATAAGGCAAAGCTGGTAATAAAAGATGGTTCAGGACATTTTCTTGTTAAAGACAGTGATGAGACATTGGCTGATGTGTTTTACAAAGCAAAATCAGGGATCACTGTAACCCCTAAATCTGCTGGCCGCGTGGCTGTCTCTGTCTATGATATGTGCTTAGATTCAGAGAGACCATCTAAAGCTGAATTGAGATTCTCCGATATTCATATAATTGAAGTTGTTGTTGCAGATAAGGTCGAGCTGCATAAAACAATAAAAGCAGTTGTTCAAATGAAAGATCATGAAGGGAATCTTCTAAGTGTCAGAGATATGACTATGATGAAACTTGCTCCACAATTATCATCACAAATCATCGACTTCAAGCCAGAATTCAAAGGCACAGACCTGAAGTCAGGTTTTCTCAATAAAGCATTATACACTTTACAAGGCTTAGCAGTTGGAGTAACAACACTGACATACCATGCAGTTCAGTCAAATGGACGACAAATCAGGAGCAAACCCCGAGACATACAGGTTTTCCCTCCTCTTCGCCTGGATCCAAGACATATTCTTTTGATAGCTGGAGCAACATTTCAGGTTAGAAGTCACGGTGGACCACAGCCTCAGTCTACAACTGTATTTGAGATTGGAAATAGGACAGTTTCCTCAGTGAACCATGTAGGACTCATCACTGCGCTTGTACCTGGTCACACAACACTCACTGGCATGGCTCAAGGGACAGATCCCCATTCTGGAAAAACAATTATTTATTCAAAAGACCAAATAACCGTTGAAGTAATAACATTAAAGGGTTTCAAGATTCATGCTCCAGCAACAACAGTCATATCTGGCTCTGAGGTTGGCATTTATGCAGTTGGTTACAACGGAGAAGGTCCATTCACATTTGCCAGCTCAGTACCTTACCTTCGATTTCATTGGTCTCTTTCTAATAGCGAGGTTGCATCACTGAAGTCAGTTTATCATGCGTCTGGTATAACTGTGAAGAATGAGAAAGACTTCAGAATATTACTGAACGCTCATAAAGCTGGTCAAGCTACCATAAAATTGAAAGTAGAAATTGCTGATCTAAGTAATAATCAAATTTTAGAGCATGTAATCTTAGAAGATGAGATTCAAATACAGgTGTTCGATGGACTTAAAGTTTTGTTTCCTCAAAATGGCGAACTGCTCCTTCCTCAAAGTATCgattcaaaattgaaaacaaacagAGACGGCATTGCTCGTATGTCGTATGACGTCATCCGTAGCTGCCCTGATAGTGACAAGGCATCGGTTCTTGATGTAGCTTCAGATGGTCGCATTAAAACCACTACAGCTTCTGGATATGCTAATGTCTTGATTACATCACATGAAGATTTCGGACTCAAACAAACTGCTGTTGTTCGTGTTGAGGTTAAAGCAGTTGCATCAATCACTTTAATTCCATTGACATCGATATCTGATGGTCCAGATAATTTGCATTTTATACCAATAAGTGCATCTGCAAAATTTGGTGTCACTCTACATGATAACGTTGGACGAAAATTTGATGTTTCAACCATACCATTAAAGCACAGGCCTCACAGATTCATCTCAAGCCATCTGGTCCACATCAAATTCAGAGTTCTTTCCATCGACTCTAAAACTGGAATTGGCATTGGTAATTCTGTTGGTTCTGCAATGGTTTATGTATCACAAGGTGACACAACAACTCACGTTGAGGTCGTTGTTCAGAAGGCCTCAAGTTTACATCTATCAACATCAGGGCTCGAAGCTATCATTCATAATCCATCTAACAAGAAACAAACTTATGATATTGCAGTCAATATTATGGATTCGGTCATTCAAAAGCCAAATCTATGCGAAAATACAGTGGAATATAGTAATAAACGAAGCCTAAGAGTACCATTCAGTTGTTCATTGACTGCAGTAGATGCACTGAGAATATTACCTGTGGAAACAATACTGAATGTCAGGCCTAAGTATGTGAATGGTCGTCCGTACTGTGAAATCTCAGTGACAGATTTGCCAGAGAGCATGCTGAAGCAGATCAGCACCCTGGATATAGTATTGTCATTGGAAGCTACATTAACAGATCAAGAGAATGATTTGGTTCTTCAGTCTGATAAGATTCAACTACCATTCATTCCTGCTTTCGTTCTGAGTACAAAACAAGTTCAGCTATCATCTGATAAACCATCTGTTCTGGTCAAAGTTACTGGAATAACCTCACATCTGAGTAATCTAAAGGCTGGCTCGGAGGATCCTTCGTTGGTTGAAGTTGAATTACTGAAAACATCGCATGATAACAGTCACCTAGATTACGAAATCAAACGCGTCAAAGGTCCAGCAATTTCAGACCAGAACATAACAGTATTTTTTGAAAGCGCTGTAACAGGACAGAAGGAAAAGCTTGCAGTTCAACTTGAAGCTGATACACAGAAACAAGACACGTTTATTTTCAAACCGCAACACTGCCCGCCTGTGAAGGAAAACAATACCAACCGACTATAA

Transcript

evm.model.HiC_scaffold_27.147

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8TEM1	Nuclear pore membrane glycoprotein 210 OS=Homo sapiens OX=9606 GN=NUP210 PE=1 SV=3
P11654	Nuclear pore membrane glycoprotein 210 OS=Rattus norvegicus OX=10116 GN=Nup210 PE=1 SV=1
Q9QY81	Nuclear pore membrane glycoprotein 210 OS=Mus musculus OX=10090 GN=Nup210 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002699 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02368 all species →	Big_2	Bacterial Ig-like domain (group 2)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003343 all species →	Domain	Bacterial Ig-like domain, group 2	Interproscan
IPR045197 all species →	Family	Nuclear pore membrane glycoprotein 210-like	Interproscan
IPR008964 all species →	Homologous_superfamily	Invasin/intimin cell-adhesion fragments	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23019 all species →	NUCLEAR PORE MEMBRANE GLYCOPROTEIN GP210-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005643 all species →	Cellular Component	nuclear pore	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14314	NUP210, GP210; nuclear pore complex protein Nup210	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.