Detailed information of evm.model.HiC_scaffold_27.201 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_27:2763246...2813199
NR annotation: XP_001634432.2, transforming growth factor-beta receptor-associated protein 1 [Nematostella vectensis]
Species Chrysaora quinquecirrha · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A4IG72Transforming growth factor-beta receptor-associated protein 1 homolog OS=Danio rerio OX=7955 GN=tgfbrap1 PE=2 SV=1
A7MB11Transforming growth factor-beta receptor-associated protein 1 OS=Bos taurus OX=9913 GN=TGFBRAP1 PE=2 SV=1
Q3UR70Transforming growth factor-beta receptor-associated protein 1 OS=Mus musculus OX=10090 GN=Tgfbrap1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004078 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF10366
all species →
Vps39_1Vacuolar sorting protein 39 domain 1RepeatInterproscan
PF08170
all species →
POPLDPOPLD (NUC188) domainDomainInterproscan
PF00028
all species →
CadherinCadherin domainDomainInterproscan
PF06978
all species →
POP1_NRibonucleases P/MRP protein subunit POP1, N-terminalDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019452
all species →
DomainVacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 1Interproscan
IPR015919
all species →
Homologous_superfamilyCadherin-like superfamilyInterproscan
IPR020894
all species →
Conserved_siteCadherin conserved siteInterproscan
IPR002126
all species →
DomainCadherin-likeInterproscan
IPR012590
all species →
DomainPOPLD domainInterproscan
IPR001180
all species →
DomainCitron homology (CNH) domainInterproscan
IPR039182
all species →
FamilyRibonucleases P/MRP protein subunit Pop1Interproscan
IPR009723
all species →
DomainPop1, N-terminalInterproscan
IPR000547
all species →
RepeatClathrin, heavy chain/VPS, 7-fold repeatInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22731
all species →
RIBONUCLEASES P/MRP PROTEIN SUBUNIT POP1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005509
all species →
Molecular Functioncalcium ion bindingInterproscan
GO:0016020
all species →
Cellular ComponentmembraneInterproscan
GO:0005886
all species →
Cellular Componentplasma membraneInterproscan
GO:0007155
all species →
Biological Processcell adhesionInterproscan
GO:0007156
all species →
Biological Processhomophilic cell adhesion via plasma membrane adhesion moleculesInterproscan
GO:0000172
all species →
Cellular Componentribonuclease MRP complexInterproscan
GO:0001682
all species →
Biological ProcesstRNA 5'-leader removalInterproscan
GO:0005655
all species →
Cellular Componentnucleolar ribonuclease P complexInterproscan
GO:0008033
all species →
Biological ProcesstRNA processingInterproscan
GO:0006886
all species →
Biological Processintracellular protein transportInterproscan
GO:0016192
all species →
Biological Processvesicle-mediated transportInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.HiC_scaffold_27.201.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP