Gene detail

Detailed information of evm.model.HiC_scaffold_27.58 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_27:764606...799051
NR annotation: XP_047132382.1, neogenin [Hydra vulgaris]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_27.58

ATGGACCGTGCTCCTAACACACCATATACCCTggaaacagcagcaacaacaacagcttttGTTAGAGGCTTGAATCCTTATAGCACCTACAAGTTTTACGTGGTGCCATATTGGCAGGGATCACAGGGAACCAAGTCGAATGAAGTCACCATCAAGACACCTGCTGGAGCTCCGTCAACAAGTCCACAGAACCTTCAGAtagtatcgtcatcatcaaacaGCCTCACTATCAATTGGAAACCACTGACAGGTGATGGAACAAATGGTCCAATCACAGGTTACATCATAAAATACAAGATTCCCGGATCTAAATTGTCTACGACTACATTGACTGCACCGGCTACTGCAACTTCGTTTGTGATTCATGGTCTATCAAGTGACACAGAATATTCAGTGAAAATTGCAGGAAAGACTTCTGGTGGAGATGGTCCATTTTCAAAAGGAGTTAAAGGAAGGACAGCCAAGGTGTCAGgaCCAAGCATGCCTCGGGACTTCAAAGTAACGCTTGATCCATCAGACCCCCGTCTTGTGAACTTTGAATGGAACAGACCAGCTACATTCAATACAAAAATTGAGCAATACGAGATATACTATAAAACGGGGGTATCGTGGGAGATGAGTAAAGTCGGTGGAACAACAAGTAGTATTCGAAATATGAAATTCGATTCAGGAACTAATTATGTATTCAAGATACGAGCACGTGACATTAACACTTGGGGAGATTTCACCAATGAAATTTCAGTTAGAACAATGGATGATACATCAGCACCAGGCCCCGTCCAGAATCTAACGACATCATCAACACCAACAACTCTTACAATCACATGGCAGCCTCCTTTAAACTATCGCACAGTATTTGTGTCTGGATACGAGGTTATAATCCGGGACCTTACAAGTTCAACGAATGCTTTTGACGTGGTTTCTCTCAGTGGCTGGAACTCGAATAAACATGTTGTCACAAAAGGAATAATCCCAGAACATGAATATGACGTCACAGTCCGTGCGGTCAATGCAAAGGGTTCAAAGAGTATTgcgaaaacaacaacaacgacgaTAAGCAAAGCTTTGCCAATACTGGTCATAAGCAACGTAAACGTCAACCAAAGAAGCATCGAGTTTGATTGGACAGACACAACCTCGTTATCAGGAGGAGAATACATCATAAAATACACAAAATACGACGCCTTAGGCCGACCCATACCAACCAGCCTTACAACGTCATCACGGACAATCGAAATTGATGGCCTAACTCCTTACACCTATTACACGTTTGATGTGCATCGAAAAGATGCAGCGATTGGAAGTGGGGCTATTGTGAGAAAGAGAACCCTCCCTGCTGTACCCAGCGCCCCCGTTGAGGTCACTGCTAGGAGCAATAAAACATGGGTCAGTTTAACTTGGCAAGTTCCCGTATATCCAAATGGTGAGATAAAGACGTATAAGATCCTTTATACAACGGATAACTCGCAGAAGAATTCTGACAGAATAATGCAGGATACAGGAGGTAATGTGATGTCATATAATTTGACTGGCCTTACAAGTAAAACAATGTACTACTTCCGAGTATTAGCAGTTAACCAGGCAGGAGCTGGCAAAGTTTCTGAAACAGTTGGCATCAAAACAGGTGGTGGAGCGGCAGGAGTTGCAGTTCCTGGTGGACAAATTCCAGTCAGTGGAGCTGCTGcacATTCTCCAGATGATCTCGACAGCAAGCTTTGGTGGATTATTTTGGTCATTGTTCTCCTTCTGTTGCTGctcattttgttgttgttgctgatctactgttgttgttgtcgaaAGAAAGGACATGACTGCTGCCCATGCTGCTTTGCATGCTTTGACAAATATTGTCTTCCGTGTTTCATCTTCTGTTGTCCCTGTTGCTGTAAAGGCGAAGAAAAGAGATTACATGAAAAGAATGCTTACGTAGCTGCCCCTGGTGGAACTGTCAATGGATTTGGCAGTATGAAGAAAGAAAGTCAGAAAGGACTATGGCTTGGTGGCGGAGGAGCAGCTGCTAAGGTGGAGGAAGCTGAGTTAAAACCATTGAGAGCTAATGAATTTGAAGCTGCTGTACCACCCCCTGTACCATTGTCGCCAGGAAGACTCAATGCAGAAAGTTACAGTAGATCTGCAGCCTCGAATGGTTCTTTGAACAGCAGTCGAAGTGGTGGAGGCATAAGAGTTGCAGTTCCGGGGGATGCTACCTTCATTTCGTACAAGACAAGTCTGAATGATTACTGTCAAAAGACTGGGTGGCTACATCCTCATTACAACACCAATCAAGAAGAAGGCGGATTTGCTAGTACTGTTGTATGCGGAGGACATCAGTATAGCTGTGGAGGAGATCTAGGTGTATCAAAGCAGGAAGCTGAACAAAGAGCTGCCTTTATGGCATTGCAAGGCATCGGTGTGATTCCTGGAAGTGCAAAGTTTGGCATTGATGCAAGCATAAGTGTACCAAGTCCTGGTGAACAGTCATTTATTTCCTACAAATGCAGCTTACATGACTTCTGTCAGCAGTGTAATATTCTGCCACCAAGGTTCACAACATCAGTCAAAAGTCAAGGTTATAGTTCACAGGTAAACGTTGGAAGTCATACCTTCAATACAGAAAACACGGCACTCAGCAGTCAAGATGCAGAACAAAAAGTGGCATTCACGGCATTGCATGGATTGTCCATGATGGAATCTGGTGCACAATATAACCCCCCAGCTTGCTTCACTGTGGCTGGTCCTGGCGACACAAACTTCATCTCATTCAAGAGTAGCCTGCACGACTTTTGTCAGCGGTATAAACTTCCTCCTCCGCAATATATCACAACGCAAATGCCACAGGGGTACTCAGCAAAGCTTAAATTTGGTGGCCTCTTTTTCCAGAGCAGTGATTACTTCACAACGAGGCTTGAATCCGAGCAGCATGCTGCATTTGAAGCCTTACAGGGCCTAGGCCTACTGGAATCTGGTGTTCGATTTGGTTCCGGTGACACAGACAGGGCTTCATCACGTGCCGGAAGTCAACTTTCGCTGTCAAGTACTGGTATTGGTGAATCAAGAAATGTTGGTTCAAGAAGTCATTCACGGCATGGTTCAGCTTCTCAACTCAGTTACGGTTCATCATCTCAAACTGCGGAGTCCTCAGCGCTATACAGATCCGAGGTCAATACGCAGGCGCAATCCGAGTATACTAATGGCTACAGCAGTGGAGGAGACGGAGGCGGAAGAGCAGTTTACATCACCAAGACAACGATACCACGTGTCGAACGATCGAATTCATATGGAAATACAGAGCGAAATTTCGAGAAAACGATCGAAAATCGATTCGGCAATGGCGTCAGTTATTCTGTTACTTATCAACATTCGACAGTTCGTAACTTTTCGACGTTACCCCGAAAGCAACCAACGTCGCACGCTACATCATCATCCAGTTATTCTCAGTATGCAAGCGGCTCGAACAGACTCGTGACAAGTCGACGGGCTTACAGTAGCAGCTCCCAGGCTGTCAACGATGACCAAACTGCCAGAGATTTCTCAGAAACTAAATCCGCAAGTCATCCTGCCCTCACAGAGCTAGAACGAGAAATGGCTGGATTAGAAGGCCTAATCAAAGACCTGAATGGCATTACTGCGTCACAACAGGGCATCCAGAAGGGCAGACACAGAGAGCAGCGGGGTTGTGAAGCCATCTGCGAGGCCCATAAGCGTATTCGTGATTTGGGACGTTTCCAGGAAAAACCAAAGATATTCGAGACATCTCCGAAAACCATAAAAAGATATATGggaaatgggggggggggGAGAAAGTGGACTAATACATTGGCTAGAAAGGTGCAAAAGTTTGCCAAGCAGACACTACTCGAAAGCCAGATAAAGCATATCGAAAACTGGGCAAAACTTAGCGAGGCTTTCTCGCTTTATTTAGTTAAATTTTTAGACGATAAACAGTTAAAGACCTTGTTACAAAGCTTGGAAAACAAGGGAGGAATACATACGGATTGTGTAGTTCTTGAACAAGACGATTCTCTGAGAAAATTGACAGGCCTAACCCAGGCAAATGTCCTATTTTGCAAAGTGCTTCGCTGGCCTGATCTAACTTCGAGCACGACTCTTAAAAATCACGTAAATTGCAGAAATAATGCATCAACAATTTGTGGAAATCCCTATCATTACAGCAAAATCGTTATGCCAGAGAGGCAAATCTGCCAGGCGAGTTCTCCCACATCTTTCGAAAGTAGACAAGAGGAAGTACAAGATGTCTGTTCTGCAACCAGCGAAGGTGTCACTCCACCAGATGAGATGCTGCCAGTTCACCAGATGCAGGATCAGACACATGCAATCCAAATCCCTACATTGTCACCACATCAAGGCTCTCCCGCTGCCTGTTTGGACAGACGGCGCAGCCAGTCATGGCCTCcttcatcacaatcatcattcgAATCATGGTGCAGCATTGCATACTGGGAAACGAGAAAGCGAATCGGACGGGTCTTTGATGTGTACAGCAATTGCATCAACGTGTTTTATGAACTGCCACAGGGTGACGGGCTTTGTATCCGATTATTACCGCAGGGAGACCAAACTGATTACGTCAGCAAAGTCAGAAGACACATTGGCTACGGGTTTCAGTTGACCAAAGAGCATGATGGGATTTGGATTTACAATCGCAGTGAATACTGTATATTTATTGGCTTACCAGCCATCCAATCAGATCTCAGTATTGACTCAAGTTTAGCTCAACCGGAAGTTACTAGAGTGCCGGCCGGTCATTGTCTAAAAGTCATTGATTTCCTGCAGCCAATAGAATTTGATAGACATCATAGGAGTAAACAGTTGTCAAAGGGACCATGTGATATGTGCTGCATTCGCGTCAGTTTCGCAAAAGGTTGGGGCGAGAAATATACACGTCAGTTCATTACGTCATGTCCATGCTGGGCTGAAATATACTTGAATGACTCATGTTTAGCGATGCCAGGAAGATGA

Transcript

evm.model.HiC_scaffold_27.58

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9W734	Mothers against decapentaplegic homolog 6 OS=Gallus gallus OX=9031 GN=SMAD6 PE=2 SV=1
O35182	Mothers against decapentaplegic homolog 6 OS=Mus musculus OX=10090 GN=Smad6 PE=1 SV=1
O43541	Mothers against decapentaplegic homolog 6 OS=Homo sapiens OX=9606 GN=SMAD6 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001446 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan
PF00035 all species →	dsrm	Double-stranded RNA binding motif	Domain	Interproscan
PF03165 all species →	MH1	MH1 domain	Domain	Interproscan
PF03166 all species →	MH2	MH2 domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR013790 all species →	Family	Dwarfin	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR001132 all species →	Domain	SMAD domain, Dwarfin-type	Interproscan
IPR003619 all species →	Domain	MAD homology 1, Dwarfin-type	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR036578 all species →	Homologous_superfamily	SMAD MH1 domain superfamily	Interproscan
IPR014720 all species →	Domain	Double-stranded RNA-binding domain	Interproscan
IPR008984 all species →	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan
IPR017855 all species →	Homologous_superfamily	SMAD-like domain superfamily	Interproscan
IPR013019 all species →	Domain	MAD homology, MH1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13703 all species →	SMAD	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0007179 all species →	Biological Process	transforming growth factor beta receptor signaling pathway	Interproscan
GO:0009653 all species →	Biological Process	anatomical structure morphogenesis	Interproscan
GO:0030154 all species →	Biological Process	cell differentiation	Interproscan
GO:0060395 all species →	Biological Process	SMAD protein signal transduction	Interproscan
GO:0070411 all species →	Molecular Function	I-SMAD binding	Interproscan
GO:0071144 all species →	Cellular Component	heteromeric SMAD protein complex	Interproscan
GO:0140416 all species →	Molecular Function	transcription regulator inhibitor activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005667 all species →	Cellular Component	transcription regulator complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05694	PTPRB, PTPB; receptor-type tyrosine-protein phosphatase beta	EC:3.1.3.48	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.