Detailed information of evm.model.HiC_scaffold_27.76 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_27:1054417...1057870
NR annotation: XP_047126829.1, WD40 repeat-containing protein SMU1 [Hydra vulgaris]
Species Chrysaora quinquecirrha · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6P4J8WD40 repeat-containing protein SMU1 OS=Xenopus tropicalis OX=8364 GN=smu1 PE=2 SV=1
Q6NRT3WD40 repeat-containing protein SMU1 OS=Xenopus laevis OX=8355 GN=smu1 PE=2 SV=1
Q2TBS9WD40 repeat-containing protein SMU1 OS=Bos taurus OX=9913 GN=SMU1 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006640 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF17814
all species →		LisH_TPLLisH-like dimerisation domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR045184
all species →		FamilyWD40 repeat-containing protein SMU1Interproscan
IPR006595
all species →		DomainCTLH, C-terminal LisH motifInterproscan
IPR006594
all species →		Conserved_siteLIS1 homology motifInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22848
all species →		WD40 REPEAT PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000398
all species →		Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0008380
all species →		Biological ProcessRNA splicingInterproscan
GO:0071011
all species →		Cellular Componentprecatalytic spliceosomeInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.HiC_scaffold_27.76.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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