Gene detail

Detailed information of evm.model.HiC_scaffold_27.78 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_27:1088702...1133099
NR annotation: XP_022783530.1, neurogenic locus notch homolog protein 1-like isoform X2 [Stylophora pistillata]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_27.78

atggcatcatcatcagctgTAGCTGATCTTGGAAAACGTTTACTTGAAGCATCAAGAAAAGGAAATGCAGAAGAAGTGAGGCAGCTTATGGCAACAGGGGCTCCAATTACGACTGACTGGCTTGGAACATCACCATTGCATTTGGCAGCCCAGTATGGTCACACAGTCACTGCCGAAGTTCTTCTGAGGGCTGGTGTTAGTAGAGATGGGAAAACTAAGGTTGATAAGACACCTCTGCATTTAGCTGCTCAACACGGACATTTTGAGATTGCCAAAATGCTGATAAAGAGTGGAGCAACTGTAAATCAAGTCGACATGTTAAACATGACTCCACTACACTGGGCTGTAGAAGCGCATAGTCCAGAAATATGCAAACTCCTGATGAAAAATGGTGCTACGACGGATACAAGAAATAAGTTTGGACAAAGTGCAATGGACATAATAAAAGCAAAGAATTATCATAACCTCACTGAAATTTTGCTCTGCACGAACCAAGTAAGTGTCGATCCTATTTTTGatAACAACAACACCAATATTTATTTTGAATCACGAAAACGAGCTCGCACGCGGAAGTTTCCAATGACCGCGGGATCATGGACTGGAGGAGAGTTGCAGACTGACAAAGACAGTAGGCCTAGGCCAAAGCAAGCAAGATTAATTGTTGAAGAGAAACAGCCAACAACGAACATAAATGAAAACTTGGAAGAAAGAGAATCAGTTGCTAATGGAAACAATTTATCATCTCTAGTTGATGCCGCTGCTTTAGTGAGGTCGAAGGCTCACAACAacatcagcaacaacagaatATCAGGATCAATCAGTGGAGATACCTCACAGCGAAACATACCTGTCTTTACGGACGCAAGCGTTCTTGATACACTTGCTACCTTGGCAACGGCATCTACACAAATTATCACTTCCGGAAGTGACACCATTGGCTCAACTGGGACAAAAACAGCGTCACAACCAAATAGTTCATTGAGACCTAGTTACGTCACAATCCCTGGTATCCAGGCCCCTGTTCAAATATTACAAGCAAATCCGAATCAGCCCGGGCTGGTTACTCCAAGTCCCGTTGCTTCTGCGCTACCTGCGGGAATGATACAACTGGCATCACCTCTCGCGTTCAATATCATGCCTGGTGGAAGGCTACAGGTTGGACAACCTGTAGTGTCAGGTGCTCATTTGAACATTCCTGTACAAATGCCTTTACAAACCGCAGGGCTTCCAGCTGGACATTTCATTGCTGTTAACAATTCAAGCAATACTATTATCAGTCAGCCTGCAGGAACTCTTGGGCAGAGTGTTGCTAAGCAACCTGTTGTCACGGAGACCTTGTCAAGTCGTCCTACGAGCATTATGTCAGCGGCTACCCAAGGTGCGACTGCTGAATTACCACAAGGGAATCTTCCTGTAAACCTGCCAATTGGATTGGTTAATACGCTTGTTGGTGGCAACGTCTCATTGGCTAATATCCAACCGTTACCTGGCAACACAAGTACAGCACAGTCTGGGGACGCAAGATTTATTCAGCCTAAAGCAGTACCAGTTACGCAGATTAGTCTACAACACGGAATGGCTCCAGCTCAGCTCGCTCAGGCTATTCAGTATGCAAATATAGGTCCTGGACTTGCTCCTATACCATTTTTACCCGTTGCGGGACTTGGTGGACTGCAGTTATTACCACagGTGATACCAACACAACTCTTTAATGCATTGCGAGGATCTTTGCCCCAGGCTCCTCAGTTCCATCCTCAACTCGCAAACAATGCGTACACGATTCCAATGTCTCCATTGAATCTCTCGAGCATTTTGCCAACCGCTGCCTCACTGGCCCAACTGCCGTTAGCACAACAGCAAAGTTTAGCACAGCACTTACAAATTCCTGCAACGCCACAGGTTCACAGCTCCGTCGCCCAATTGTTGCAGCCGTCTCCTAACCAACAGCAAACTTTAGCGTCCTCGACCCCACAGCCGCTCAATGTGGTAACCCAGAGAATTCTCGAATCGCCCCCTAATCAGCAAATCGTCACACTCCCAGCACAAGGTCACGGCTCCATCACCCAACAGTTGCAGCCGTCTGCTAACCAACAACAGCCAGCAGCCTCGACCCAACAGTCGCTCAATGTTGTGACCCAGCGTATTATCGAATCACCCTCACAGCAACAAATCGTGACATTAGCCCCGCAAATTGATGACCAAAGCAGACCTGATTCATTGGCTCAGCGTTTACTGGGTTCTTCTCCCTCGGACCACACTGTCTCTTCGGGACCAGAGGTCCAAAGCTTGTTAGACGAAAGCAGATCTGGTCCACTGGCACAACATGTTCTCGGCTCCTCTTCCCCTGAGCAGACTGTCTCATTGGGACAAGAAATTCAGCGTACATTGAACGAGACAAAGCCACGCAGTTTTGCGGAAGACGTCCTTAGTTCCACTACTGAGCATCAAATGGTCTCTATGGGACAAGAAGTAGAGAGTACGTTAGTTCAATCTCAGCCTGACGGTTTGGCAAGAGGCGTTCTTCCGTCTCCAACCCAACAACCAACCTTTACCTCAGAGCAGGATGTACAGGACCCATTGAACCAAACTCGAAATGGCAATATTGATCAATATGCCCTTGGGTCTCCAGCACAAGACGTGCAGAGTACGTTGAACCAATCTGACACCTTTTCCCGGCATATGCTTACTTCTTCCACTCAGCAACCGGAAATCTCCCTGCAGCAAGAGATACAAGACCCACTGAACCGACCTCAAACTGACACTTTCGACCAGCGTGTCCTTGGATCTCCGGCCCAAGACATCCAGAGTACGTTGAACCAATCCGACACCTTGTCACAACACATCCTTGCCACTTCCACTCAACAATCAGAAGTGTCCTTGCAACAAGACCCACAAAACCCACTGCTCCAACCTCATAGTAACACTTTTGACCAGCGTGCCCTTGGTTCTCCGGCCCAAGATGTCCAAATCACATTAGCTGAAGCTAGTACCTTGGCACAAAGTGTCTTTTGCTCCGCAAGTGAATCACCAATCGTCACACTGGCTCAGAATATAATAACATCTTCTATGCAACCGGAAAGCGATGTCATGACGAAACAAACCCTAAATTCATCGACTGAGGATTTCAGTGATTCCCCAAATACACAGGCGTTTATAGACACTTTTGCCCAGCCACCCACATCTGAGCAACATGTGAGTTCCACCATTGATCCTGAGTTGTCGTTATCGCCTGCTAACtttaatagacgcttccgcaaaagatggccgccGCATCCAAGAGGTGGCTATAGAGGAGGTCCTGGTCATGGTCCACCTCCCCCGGTAATGGGTCATCCCCCACAGTTATCAAGACAACCTCTAATGCATAACCAGAAAAATAGTGTCACACATCAAGTGTTCGATCCAATTCATTCTGCATCATTTTTTCCAAAAGCAACACCAGAAGTTGATGACACAGCTTTTACCCAGGCTTTATTAAAGAGGAATCAAAATTTGACACCCTCTGCTGCTGAGCAGACTGCTGTTACAAATCTTCATGGGAAGCTTGAAACAGTTGTTGAAAGTCTAATTCTTGCTCAAGAAGGACTTAACATTccttcaatcaaaatgtttgacagttcaatcgaaatgtttaacagttcaaacgtcatgtttgagccttcaatcaaaatgtttgacagttcaatcaaaatgtttaacagttcaaacgtcatgtttgagccttcaatcaaaatgtttgacagttcaatcgaaatgtttaacagttcaaacgtcatgtttgagccttcaatcaaaatgtttgacagttcaatcgaaatgtttaacagttcaaacgtcatgtttgagccttcaatcaaaatgtttgacagttcaatcgaaatgtttaacagttcaaacgtcatgtttgagccttcaatcaaaatgtttgacagttcaatcaaaatgtttaacagttcaaacgtcatgtttgagccttcaatcaaaatgtttgacagttcaatcaaaatgtttaacagttcaaacgtcatgtttgagccttcaatcaaaatgtttgacagttcaatcgaaatgtttaacagttcaaacgtcatgtttgagccttcaatcaaaatgtttgacagtttaatcgaaatgtttaacagttcaaacgtcatgtttgagccttcaatcaaaatgtttgacagtttaatcgaaatgtttaacagttcaaacgtcatgtttgagccttcaatcaaaatgtttgacagttcaatcaaaatgtttaacagttcaaacgtcatgtttgagccttcaatcaaaatgtttgacagttcaatcgaaatgtttaacagttcaaacgtcatgtttgagccttcaatcaaaatgtttgacagttcaatcgaaatgtttaacagttcaaacgtcatgtttgagccttcaatcaaaatgtttgacagttcaatcaagatgtttaacagttcaaacgtcatgtttgagccttcaataaaaatgtttgacagttcaatcgaaatgtttaacagttcaaacgtcatgtttgagccttcaatcaaaatgtttgacagttcaatcgaaatgtttaacagttcaaacgccatgtttgagccttcaatcaaaatgtttgacagttcaatcaaaatatttaacagttcaaacgtcatgtttgagccttcaatcaaaatgtttgacagctcAATCGAATtgtttaacagttcaaacgtcatgtttgagccttcaatcaaaatgtttgacagtttaatcgaaatgtttaacagttcaaacgtcatgtttgagccttcaatcaaaatgtttgacagttcaatcgaaatgtttaacagttcaaacgtcatgtttgagccttcaatcaaaatgtttgacagctcaatcgaaatgtttaacagttcaaacgtcatgtttgagccttcaatcaaaatgtttgacagtttaatcgaaatgtttaacagttcaaacgtcatgtttgagccttcaatcaaaatgtttgacagttcaatcgaaatgtttaacagttcaaacgtcatgtttgagccttcaatcaaaatgtttgacagttcaatcgaaatgtttaacagttcaaacgtcatgtttgagccttcaatcaaaatgtttgacagagcAATCGAATtgtttaacagttcaaacgtcatgtttgagccttcaatcaaaatgtttgacagttcaatcaaaatgtttaacagttcaaacgtcatgtttgagccttcaatcaaaatgtttgacagttcaatcaaaatgtttaacagttcaaacttcaataaaatgtttaacagttcaaacgtcatgtttgagccttcaatcaaaatgtttgacagttcaatcgaaatgtttaacagttcaaacgtcatgtttgagccttcaatcaaaatgtttgacagttcaatcaaaatgtttaacagttcaaacgtcatgtttgagccttcaatcaaaatgtttgacagttcaatcaaaatgtttaacagttcaaacgtcatgtttgagccttcaatcaaaatgtttgacagtttaatcgaaatgtttaacagttcaaacgtcatgtttgagccttcaatcaaaatgtttgacagctcAATCGAATtgtttaacagttcaaacgtcatgtttgagccttcaatcaaaatgtttgacagtttaatcgaaatgtttaacagttcaaacgtcatgtttgagccttcaatcaaaatgtttgacagttcaatcgaaatgtttaacagttcaaacgtcatgtttgagccttcaatcaaaatgtttgacagctcaatcgaaatgtttaacagttcaaacgtcatgtttgagccttcaatcaaaatgtttgacagtttaatcgaaatgtttaacagttcaaacgtcatgtttgagccttcaatcaaaatgtttgacagttcaatcgaaatgtttaacagttcaaacgtcatgtttgagccttcaatcaaaatgtttgacagttcaatcgaaatgtttaacagttcaaacgtcatgtttgagccttcaatcaaaatgtttgacagagcAATCGAATtgtttaacagttcaaacgtcatgtttgagccttcaatcaaaatgtttgacagttcaatcaaaatgtttaacagttcaaacgtcatgtttgagccttcaatcaaaatgtttgacagttcaatcaaaatgtttaacagttcaaacgtcatgtttgagccttcaatcaaaatgtttgacagttcaatcaaaatgtttaacagttcaaacgtcatgtttgagccttcaatcaaaatgtttgacagttcaatcgaaatgtttaacagttcaaacgtcatgtttgagccttcaatcaaaatgtttgacagttcaatcaaaatgtttaacagttcaaacgtcatgtttgagccttcaatcaaaatgtttgacagttcaatcaaaatgtttaacagttcaaacgtcatgtttgagccttcaatcaaaatgtttgacagttcaatcgaaatgtttaacagttcaaacgtcatgtttgagccttcaatcaaaatgtttgacagttcaatcgaaatgtttaacagttcaaacgtcatgtttgagccttcaatcaaaatgtttgacagttcaatcgaaatgtttaacagttcaaacgtcatgtttgagccttcaatcaaaatgtttgacagctcAATCGAATtgtttaacagttcaaacgtcatgttagagccttcaatcaaaatgtttgacagctcAATCGAATtgtttaacagttcaaacgtcatgtttgagccttcaatcaaaatgtttgacagttcaatcgaaatgtttaacagttcaaacgtcatgttagagccttcaatcaaaatgtttgacagttcaatcaaaatgtttaacagttcaaacgtcatgtttgagccttcaatcaaaatgtttgacagttcaatcaaaatgtttaacagttcaaacgtcatgtttgagccttcaatcaaaatgtttgacagttcaatcgaaatgtttaacagttcaaacgtcatgtttgagccttcaatcaaaatgtttgacagttcaatcgaaatgtttgacagttcaatcgaaatgtttgacagttcaatcgaaatgtttgacagttcaatcgaaatgtttgacagttcaatcgaaatgtttgacagttcaaacgtcatgtttgagccttcaatcaaaGTTTTTGACAGTTTAATCAAGATATTTGGAGCAGCAAGTCGTGCTTCTTTTTGCTACCTAAAAATTTCGCCCGTAGCAGCAACTATCAGTGAAGATTTGAAGAGGGGATGTTTGCCCCATTCTTTTGTGACTCTGTCCTGCTCCTCTGCGTGGACGGATATTCCTGATGTCCGCTTTGAAAATGCACCATTAATCCATCTTGACCCTGGAGGAAGTGGAACTGACAAGCATCACAGAAACCTCTTTGAGGATTTGACTCTCTATGAATTGAGAAATGATGTGACATCACTGACATTCTCATTCAAAGATGGTGATCATTTGATTAATGAATGGGATGCTATTCTCATTCACGATGATCTCTTCATTGAAGTTCCACACACCTCTTTGCCACCAGgaatcaaagaaggATTTGTTTCATTGCTTGATTATGCTGAAGAATCCTTGCAAGTAACAAAGGTCACGATATGCATCCCTAAAGCAATACCAAGCAGAGGGTCTAGTAGTGCACAGTATGCATACAATGGTCTCAGTTTTGCTTTAGTTGAAAAAGTCTTCTATGTCAAAGTTGCAGCTCATATAACCCATTCTGTCAGACTTGGAAATATGTATTACAAATTTTTTGCTCTAGAGAAGAATAAGGATCACGTGCGCTGTTTTTCTCAGAAGTACATAATTTACTTCCGCATTTCTCGGAACTATACCTGTGTTGtctcctttttctga

Transcript

evm.model.HiC_scaffold_27.78

Protein

evm.model.HiC_scaffold_27.78

MASSSAVADLGKRLLEASRKGNAEEVRQLMATGAPITTDWLGTSPLHLAAQYGHTVTAEVLLRAGVSRDGKTKVDKTPLHLAAQHGHFEIAKMLIKSGATVNQVDMLNMTPLHWAVEAHSPEICKLLMKNGATTDTRNKFGQSAMDIIKAKNYHNLTEILLCTNQVSVDPIFDNNNTNIYFESRKRARTRKFPMTAGSWTGGELQTDKDSRPRPKQARLIVEEKQPTTNINENLEERESVANGNNLSSLVDAAALVRSKAHNNISNNRISGSISGDTSQRNIPVFTDASVLDTLATLATASTQIITSGSDTIGSTGTKTASQPNSSLRPSYVTIPGIQAPVQILQANPNQPGLVTPSPVASALPAGMIQLASPLAFNIMPGGRLQVGQPVVSGAHLNIPVQMPLQTAGLPAGHFIAVNNSSNTIISQPAGTLGQSVAKQPVVTETLSSRPTSIMSAATQGATAELPQGNLPVNLPIGLVNTLVGGNVSLANIQPLPGNTSTAQSGDARFIQPKAVPVTQISLQHGMAPAQLAQAIQYANIGPGLAPIPFLPVAGLGGLQLLPQVIPTQLFNALRGSLPQAPQFHPQLANNAYTIPMSPLNLSSILPTAASLAQLPLAQQQSLAQHLQIPATPQVHSSVAQLLQPSPNQQQTLASSTPQPLNVVTQRILESPPNQQIVTLPAQGHGSITQQLQPSANQQQPAASTQQSLNVVTQRIIESPSQQQIVTLAPQIDDQSRPDSLAQRLLGSSPSDHTVSSGPEVQSLLDESRSGPLAQHVLGSSSPEQTVSLGQEIQRTLNETKPRSFAEDVLSSTTEHQMVSMGQEVESTLVQSQPDGLARGVLPSPTQQPTFTSEQDVQDPLNQTRNGNIDQYALGSPAQDVQSTLNQSDTFSRHMLTSSTQQPEISLQQEIQDPLNRPQTDTFDQRVLGSPAQDIQSTLNQSDTLSQHILATSTQQSEVSLQQDPQNPLLQPHSNTFDQRALGSPAQDVQITLAEASTLAQSVFCSASESPIVTLAQNIITSSMQPESDVMTKQTLNSSTEDFSDSPNTQAFIDTFAQPPTSEQHVSSTIDPELSLSPANFNRRFRKRWPPHPRGGYRGGPGHGPPPPVMGHPPQLSRQPLMHNQKNSVTHQVFDPIHSASFFPKATPEVDDTAFTQALLKRNQNLTPSAAEQTAVTNLHGKLETVVESLILAQEGLNIPSIKMFDSSIEMFNSSNVMFEPSIKMFDSSIKMFNSSNVMFEPSIKMFDSSIEMFNSSNVMFEPSIKMFDSSIEMFNSSNVMFEPSIKMFDSSIEMFNSSNVMFEPSIKMFDSSIKMFNSSNVMFEPSIKMFDSSIKMFNSSNVMFEPSIKMFDSSIEMFNSSNVMFEPSIKMFDSLIEMFNSSNVMFEPSIKMFDSLIEMFNSSNVMFEPSIKMFDSSIKMFNSSNVMFEPSIKMFDSSIEMFNSSNVMFEPSIKMFDSSIEMFNSSNVMFEPSIKMFDSSIKMFNSSNVMFEPSIKMFDSSIEMFNSSNVMFEPSIKMFDSSIEMFNSSNAMFEPSIKMFDSSIKIFNSSNVMFEPSIKMFDSSIELFNSSNVMFEPSIKMFDSLIEMFNSSNVMFEPSIKMFDSSIEMFNSSNVMFEPSIKMFDSSIEMFNSSNVMFEPSIKMFDSLIEMFNSSNVMFEPSIKMFDSSIEMFNSSNVMFEPSIKMFDSSIEMFNSSNVMFEPSIKMFDRAIELFNSSNVMFEPSIKMFDSSIKMFNSSNVMFEPSIKMFDSSIKMFNSSNFNKMFNSSNVMFEPSIKMFDSSIEMFNSSNVMFEPSIKMFDSSIKMFNSSNVMFEPSIKMFDSSIKMFNSSNVMFEPSIKMFDSLIEMFNSSNVMFEPSIKMFDSSIELFNSSNVMFEPSIKMFDSLIEMFNSSNVMFEPSIKMFDSSIEMFNSSNVMFEPSIKMFDSSIEMFNSSNVMFEPSIKMFDSLIEMFNSSNVMFEPSIKMFDSSIEMFNSSNVMFEPSIKMFDSSIEMFNSSNVMFEPSIKMFDRAIELFNSSNVMFEPSIKMFDSSIKMFNSSNVMFEPSIKMFDSSIKMFNSSNVMFEPSIKMFDSSIKMFNSSNVMFEPSIKMFDSSIEMFNSSNVMFEPSIKMFDSSIKMFNSSNVMFEPSIKMFDSSIKMFNSSNVMFEPSIKMFDSSIEMFNSSNVMFEPSIKMFDSSIEMFNSSNVMFEPSIKMFDSSIEMFNSSNVMFEPSIKMFDSSIELFNSSNVMLEPSIKMFDSSIELFNSSNVMFEPSIKMFDSSIEMFNSSNVMLEPSIKMFDSSIKMFNSSNVMFEPSIKMFDSSIKMFNSSNVMFEPSIKMFDSSIEMFNSSNVMFEPSIKMFDSSIEMFDSSIEMFDSSIEMFDSSIEMFDSSIEMFDSSNVMFEPSIKVFDSLIKIFGAASRASFCYLKISPVAATISEDLKRGCLPHSFVTLSCSSAWTDIPDVRFENAPLIHLDPGGSGTDKHHRNLFEDLTLYELRNDVTSLTFSFKDGDHLINEWDAILIHDDLFIEVPHTSLPPGIKEGFVSLLDYAEESLQVTKVTICIPKAIPSRGSSSAQYAYNGLSFALVEKVFYVKVAAHITHSVRLGNMYYKFFALEKNKDHVRCFSQKYIIYFRISRNYTCVVSFF

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P81069	GA-binding protein subunit beta-2 OS=Mus musculus OX=10090 GN=Gabpb2 PE=1 SV=2
Q0V8G2	GA-binding protein subunit beta-2 OS=Bos taurus OX=9913 GN=GABPB2 PE=2 SV=2
Q8TAK5	GA-binding protein subunit beta-2 OS=Homo sapiens OX=9606 GN=GABPB2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004821 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF02100 all species →	ODC_AZ	Ornithine decarboxylase antizyme	Family	Interproscan
PF07528 all species →	DZF_N	DZF N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR038581 all species →	Homologous_superfamily	Ornithine decarboxylase antizyme superfamily	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002993 all species →	Family	Ornithine decarboxylase antizyme	Interproscan
IPR016181 all species →	Homologous_superfamily	Acyl-CoA N-acyltransferase	Interproscan
IPR050663 all species →	Family	Ankyrin Repeat and SOCS Box	Interproscan
IPR049401 all species →	Domain	DZF domain, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24193 all species →	ANKYRIN REPEAT PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008073 all species →	Molecular Function	ornithine decarboxylase inhibitor activity	Interproscan
GO:0000976 all species →	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_27.78.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.