Gene detail

Detailed information of evm.model.HiC_scaffold_270.2 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_270:32541...35008
NR annotation: XP_014665336.1, PREDICTED: 40S ribosomal protein S12-like [Priapulus caudatus]
Species abbreviation CQUIN · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q76I81	Small ribosomal subunit protein eS12 OS=Bos taurus OX=9913 GN=RPS12 PE=2 SV=1
P84175	Small ribosomal subunit protein eS12 OS=Gallus gallus OX=9031 GN=RPS12 PE=1 SV=2
P25398	Small ribosomal subunit protein eS12 OS=Homo sapiens OX=9606 GN=RPS12 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008226 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01248 all species →	Ribosomal_L7Ae	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004038 all species →	Domain	Ribosomal protein eL8/eL30/eS12/Gadd45	Interproscan
IPR029064 all species →	Homologous_superfamily	Ribosomal protein eL30-like superfamily	Interproscan
IPR000530 all species →	Family	Small ribosomal subunit protein eS12	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11843 all species →	40S RIBOSOMAL PROTEIN S12	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0022627 all species →	Cellular Component	cytosolic small ribosomal subunit	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02951	RP-S12e, RPS12; small subunit ribosomal protein S12e	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.