Gene detail

Detailed information of evm.model.HiC_scaffold_276.35 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_276:566047...570249
NR annotation: XP_022780866.1, calcium and integrin-binding family member 2-like [Stylophora pistillata]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6PC72	Calcium and integrin-binding family member 2 OS=Danio rerio OX=7955 GN=cib2 PE=2 SV=1
A0PJX0	Calcium and integrin-binding family member 4 OS=Homo sapiens OX=9606 GN=CIB4 PE=1 SV=1
C7A278	Calcium and integrin-binding family member 4 OS=Ovis aries OX=9940 GN=CIB4 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002832 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR051433 all species →	Family	Calcium and Integrin-Binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45791 all species →	CALCIUM AND INTEGRIN BINDING FAMILY MEMBER 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0000287 all species →	Molecular Function	magnesium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23837	CIB2; calcium and integrin-binding protein 2	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.