Detailed information of evm.model.HiC_scaffold_28.232 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_28:3015115...3051374
NR annotation: XP_047144288.1, ankyrin repeat and fibronectin type-III domain-containing protein 1 isoform X6 [Hydra vulgaris]
Species Chrysaora quinquecirrha · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8N957Ankyrin repeat and fibronectin type-III domain-containing protein 1 OS=Homo sapiens OX=9606 GN=ANKFN1 PE=1 SV=3
A0A571BF63Ankyrin-repeat and fibronectin type III domain-containing 1 OS=Mus musculus OX=10090 GN=Ankfn1 PE=1 SV=1
A0A8M9QN10Ankyrin repeat and fibronectin type-III domain-containing protein 1 OS=Danio rerio OX=7955 GN=ankfn1 PE=4 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002515 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13637
all species →		Ank_4Ankyrin repeats (many copies)RepeatInterproscan
PF05250
all species →		UPF0193Uncharacterised protein family (UPF0193)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036770
all species →		Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR002110
all species →		RepeatAnkyrin repeatInterproscan
IPR039269
all species →		FamilyAnkyrin repeat and fibronectin type-III domain-containing protein 1Interproscan
IPR007914
all species →		FamilyUncharacterised protein family UPF0193Interproscan
IPR036116
all species →		Homologous_superfamilyFibronectin type III superfamilyInterproscan
IPR003961
all species →		DomainFibronectin type IIIInterproscan
IPR013783
all species →		Homologous_superfamilyImmunoglobulin-like foldInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21437
all species →		UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0000132
all species →		Biological Processestablishment of mitotic spindle orientationInterproscan
GO:0005819
all species →		Cellular ComponentspindleInterproscan
GO:0061172
all species →		Biological Processregulation of establishment of bipolar cell polarityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.HiC_scaffold_28.232.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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