Detailed information of evm.model.HiC_scaffold_28.239 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_28:3127877...3141056
NR annotation: XP_046855813.1, ribokinase-like isoform X1 [Xenia sp. Carnegie-2017]
Species Chrysaora quinquecirrha · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q83JF4Arabinose 5-phosphate isomerase KdsD OS=Shigella flexneri OX=623 GN=kdsD PE=3 SV=2
Q8FD73Arabinose 5-phosphate isomerase KdsD OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=kdsD PE=3 SV=2
P45395Arabinose 5-phosphate isomerase KdsD OS=Escherichia coli (strain K12) OX=83333 GN=kdsD PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0010226 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01380
all species →		SISSIS domainDomainInterproscan
PF00294
all species →		PfkBpfkB family carbohydrate kinaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR046348
all species →		Homologous_superfamilySIS domain superfamilyInterproscan
IPR050986
all species →		FamilySIS family GutQ/KpsF subfamily isomerasesInterproscan
IPR001347
all species →		DomainSIS domainInterproscan
IPR011611
all species →		DomainCarbohydrate kinase PfkBInterproscan
IPR029056
all species →		Homologous_superfamilyRibokinase-likeInterproscan
IPR018506
all species →		Binding_siteCytochrome b5, heme-binding siteInterproscan
IPR035474
all species →		DomainKpsF-like, SIS domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR42745
all species →		-Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0097367
all species →		Molecular Functioncarbohydrate derivative bindingInterproscan
GO:1901135
all species →		Biological Processcarbohydrate derivative metabolic processInterproscan
GO:0020037
all species →		Molecular Functionheme bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.HiC_scaffold_28.239.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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