Gene detail

Detailed information of evm.model.HiC_scaffold_28.32 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_28:398369...406977
NR annotation: XP_047136439.1, late secretory pathway protein AVL9 homolog [Hydra vulgaris]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8NBF6	Late secretory pathway protein AVL9 homolog OS=Homo sapiens OX=9606 GN=AVL9 PE=1 SV=1
Q5R991	Late secretory pathway protein AVL9 homolog OS=Pongo abelii OX=9601 GN=AVL9 PE=2 SV=1
Q80U56	Late secretory pathway protein AVL9 homolog OS=Mus musculus OX=10090 GN=Avl9 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005417 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09794 all species →	Avl9	Transport protein Avl9	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051731 all species →	Family	DENND11/AVL9 guanine nucleotide exchange factors	Interproscan
IPR018307 all species →	Domain	AVL9/DENND6 domain	Interproscan
IPR043153 all species →	Homologous_superfamily	DENN domain, C-terminal lobe	Interproscan
IPR037516 all species →	Domain	Tripartite DENN domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31017 all species →	LATE SECRETORY PATHWAY PROTEIN AVL9-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_28.32.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.