Gene detail

Detailed information of evm.model.HiC_scaffold_28.337 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_28:4164354...4192195
NR annotation: CAB4033365.1, 52 kDa repressor of the inhibitor of the kinase-like [Paramuricea clavata]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_28.337

ATGGCGGTCAATCTGTTGAGGGACGTGTCTACGGTTCTCTCTGATAAAGGAATGatcgaagaaaagaaagttgaaCTTTTAAATGATTTAAAATCTAACTGTTTAAAGTCAATGTTTGAAGTTGTTTCAGGAGGCATTGAAAAGAAGCTTTCATTGTGTGAGATCTCTAGGCTTCAGTTCCCAAAGACCCAATTGCCAAGAGTGGGGAAACGACAACCAGTGAGAACCTCACCCAATGGAAGCTGTCTCTTCAATGCCTGCTCTATTTCACTTGTTGGTAATGAATCTTTGTCTGTATATCTCCGAAGTCTTACGAGTATTGAGCTGTATATGAATTCTTTGTATTATTCTGAGCATCCCATTTTATATGGTCAttcaagaaaaggaaaaattgttGATGAGAATACTGTTTTTACATTAATGATCTCTGACGTTGCATACAAGTCATTCACCAAGGATAATAGAATTCCCTCTGTTAAAGCAGAAGCtgtaaatattgcaaaaaacTTCACTTTTTCATCATTTGTTTGTGTGCTAGCTTTGTCAAGTGTTATTGGTCTTCCAATAGAGTCGTATTATCCAATTGCTGAAGGTTCTGGAGAAATCTCTGAAgaattatatgaaaatctttTCAATTGTTCAGTTTATCCACATTTGGTTCATGATTCTCCTGATTATCCTGATGTTAAGGTTCATTTGTTTCGTTGCTCTGTGGCTGCAATAGATTGCCTTTCTACAAAAAAAATCTATTCAGCTAAGAATCATTTTGTGCCATTGCTGCCATTAGATTTGAAAGATATGGAGTTTCCATTCTCAAAAGCCTTTCCTGTAAATATGTCTTCATCACCTGTATATAGTGTAAAATATCCAATGTTGGCAATGCCTGAAGTGAAACAAGATTTTGAGAAGTCTTTTATGCAAGCTATTGATCatgtaaagaaaaggaaacaactTACAGTTGATTCATTTGttcagaagaaaataaaatctaACTTGGACAAAAATGTTCCTGtcataataaaaaatgaaaccaTTGAAGCTCCAATTTCTAGTGCTGTTTCCACTCTTGATATAAATCAGAGCATAATTGAGAAATCTGTTGTTAGTTCTGTTGATCTTGTTCAAAACAAGGACATAGTTGCTGCAGATAGTAAGTCTAACACCTTTGTTTCATCTGGAACAATAAATGATATTGGATACATCTATGAAACATGCAATAAGCTAAGTGAGGCACTCGAGAAATTTAAACACCACACAGAAAAGTCCAAAGTGCATGAGGCTGCTACCTTAAGAGCAGTAGGGTTTCGCCAATATATGGAGCATAAGGTTAAGTCAATTGATGTCCAGCTAAATGAGAAAATTGATGAACAGGTCCGAAAGAACAGAGAAAAGTTGAAGCCAATAATCTATGCTATAATTCTTTGTGGTCGAATGAATACTGCCCTGCGAGGACATCGGGACGATTCTAAGTATTACGATGATGAGAAGAACAATCCTGGAAATTTGCAGGAAATTCTCAAATTCTTGGTTCGTTGTGGCTTCAATTTCTTGTTTGAGGAACATCTTGCAAAAGGACCAAAAAATTGCACATATCGTTCCAAGACCACACAAAATGAGATTATAAATATATGCGGTGAGCTTATTGTATCGAAAATTTGTGCAGAAATTAAGTCTGCTAAGTATTTCTCAATACTTGCAGATGAGGCTGCTGATGTGAGCAACATCGAGCAAATGCCTCTTGTTATTCGGTTTGTTGACGGGAACGCTGAAATTCGAGAGGAATTCATGGGTTTCATACCTTGTAACGAAGGAATGACAGGGGAAGCCATTtctcaaactattttgaaagcTGTGAAAGATATCGGTCTTGATATGCAATATTGTAGAGGTCAGGGATACGATGGTGCAGGGAATATGGCAGGTAGATGTTCTGGTGCTGCTACTCGCATACAGAGCAGATACCAAAAAGCTCCATATGTTCATTGCGGATCGCATGTCTTAAATTTGTGTGTAGCATCTGCCTGTAACATCCAGTTAGTTCGAAACATGATGGGGCAGGTTCGAGTCATTTCAGAATTCTTTGGTGCTCACCCAAAGCGTTTTGATCTTCTGAAAAGCCAGATAAAGGCCTTGCTTCCTAAAGCTCGCCATTCGAAGCTCTTAGATGTCTGTCGCACCCGATGGGTTGCTAGACTGGACGGCTTGGACGTTTTCATTGAAGTCTTCCAAGCTGTTGTAGCAGCTCTTGAAATAATCAGACTAAACGAGTCACGTTCTTGGAACTCGAACTCTGTCACCGATGCTGAATCACTATTCCATTCTATAACGCAATTTCAATTCATCCTTGTTCTGACGGTAGTTTCACGGATTCTTGAGGTCACAAGACCTCTAACAAAGCAACTTCAAACTGTTGAATTGGATGTTGTTGCCTCGCATGACAAGATCACTTTGCTTTATGCATCCTTAAGACGGTTGCGATCCGAAGTTCACGAAACTCACACAAATGCATTTACCGAAGCTGTCGAACTAGCCGAAAAAGTCGGAACAGTTCCATCTAGACCTCGTGTTATTCGAAAACAGGCACATCGTGTTAATATACCTGCAGAATCTGTATCTCAATATTATGAGAGAGCAATATCAGTGCCATTTCTTGATCACCTTGTCACTCAGGTTGAGACCCGTTTTTCGGAGAGGAATTTGGCAGTTTTCAATGGTTTTTATGCTTTCCCTAATAAAGTTGTCTGTAATATCGAATGGAAAAATAAATTCAGCTCTTTCCTTAAGGAATGCTTTGATGATCTTCCAGAACCGCGCTACATTAAAACCGAGCTTAAAATGTGGGAAGATCATTGGACTGCAGCACAAGGTGCTCCTCCAACTACTCTTACGCATCTTTTGCCAAAAACTGATAAATTGACTTTTCCGAACATTTACACGGCACTTCAGATCTTGGCAACGCTACCTGTTACAACTTGCACGTGCGAGCGGTCAATTTCTGTGCTTCGTAGAGTCAAAACCTATCTTCGCAACACAATGTCTCAGAACAGGCTTAATGGGCTGTCTCTCATCAACGTCCATCGTGATATTGAACTTGATGCTGACGAAGTAATCGATGTTTTTGCAAGGCGCCATCCCAGAAGAATGAAATTGATCGACATTCTAAATACTGATCCGGAAAATGAGTATGCCGTGCACGAACCAATTGTTGAGCATCCTGTTTCTACGTCGTTCTCAAAATCTTTGTTTCTGGTGTTTTTCTTGGTCAATACAGTATTTCTGGTTACCAACATCACAAGTTCATTCCTCTATTATAAAGAACCTAAAGCCTCTTACCAACAGACCATCACTATAGTTAGAGTCTCACTTGATTAcagtttgttttttatttctgcCATCATCCTGTGTTGGTGTATAATAAGGcTGACGAAAACAAGAACTACAAAGATTTTGATAGAGGGAAAGGGAGTTTCATACTGTCAAGCAATGACGGTCTGTACTTTAATTTCACTGCTGTATCTTTCAAGAACAATTTATAACATCATTGCTGTGTCACCAGTTTCAATGCCAACATTTAACTTTGGATGGATTAATGTTTCTGACCAGggagagatcggaaaacaagGCACAATTGAACACTCTACGAATAATTATGCATTTGTTTCATTTGGTGTAGTATTGTTCATATGGGAACTCCTTCCTACGTTTACTACTGTGTGGCTTTTCAGAGTTAGAAGTCCGGACACTGGCGTGGTCACCTCTGGAATAACTTCAGAGAGTTTCAGCAGCAAGTCGTATTTTTTCGATAACGATCGACGTTATGATTCTGATGACGATCTTACGACGGGAGTCACACCACCTAGTTTCGCTGGCCTTCTTGACATTCCTGGGATTGGTACGCGGACTTACAGTGTCAATGACCAAGCAAGCTACAAGCGGATTTCATCGTACGGTTCAATACCTACGCGCGGCAGCAGTTACAACGCTCAGAGTAGGAGTTATCCAAGCCCTCACGTCCGTGTTGAAGTTGCAGATGGAAGGGAGTCTGTTGTGAGCTCGTCTGATATTGAAGTCACAGTGCAAGAACCCAGACCGATTTGCATCCTTAAAACACTTGATGATCATTCatttgaattggatgaaaaggCACTTGAGGAAGTTCTCCTTCAGCCAGAAATTAGAAACAAGAAAGTTGCTGTGGTTTGTGTTGCTGGTGCATTTAGAAAAGGAAAATCTTTCCTGttgaatttttttatcagaTACCTTGAAAGAAAAGATAATGATAGCAACTGGATGGGTGAAGGAAGTGAAGCTCTGCGAGGCTTCAGTTGGAGAGGTGGTGCTGAAAGGGAAACAACTGGCGTTTTATTGTGGAATAAACCATACATATGTGAATTACCAAGTGGAGAAGAGGTTGCAGTTTTATTAATGGACACCCAAGGTGCATTCGATAGTTCTTCTACTGTCAAAGAGTGTGCAACCGTCTTTGCTCTTAGCACTATGACAAGCTCTGTACAGGTTTATAATTTGTCAAGTAACATTCAAGAAGATCATCTCCAACATTTGCAGTTATTCACTGAATATGGAAGACTTGCTTTGCAAGAAAGTGACAACAAACCCTTCCAGCGTCTTGAGTTTCTTATTCGAGACTGGAGCTATCCTTATGAGTATCCCTATGGAGATGGACAAAAACTGCTTGATCGTCGTCTAAGTATTGAACCTGGACAACATGAAGAACTAAAACAAGTGCGAACACATATCAAATCCTGCTTCCAGAAAATTGGCTGCTATCTCTTGCCGCATCCTGGTAAAGTTGTCGCCACTAATCCAAATTTTGATGGAAGATTGCAAGATATTGATGACGAGTTCAAAGAATGTTTGCATGAAATGGTTCCAGAGATCCTTGCACCCGAAAATCTCTTGATTAAAAATATCAATGGCAGTGATGTAACATGCATGGGACTTGTTGAATATTTCAAATCATATGTGAAGATTTATCAGGGAGGAGAGTTGCCTGAACCAAAGTCAATGCTACATGCTACAGCTGAGGCAAATAATCTGGCTGCATTGGCTACTTCAAAGGATCAATACAACAGGGACATGGAAGCGatttgtGGAGGAGATACCCCATACCTATCACCATCAGAATTAGAATCAAAACATGAAACAGTTCAAGCTAAATCACTGACTTTATTCCGTGCTACAAGAAAGATGGGTGGAGAAGCCTTCAGTCATGAATTCGAAGAACGACTACAGAATGAAATTCTTGAACAATATGAAAACTTTGTCAAGTTAAATGACAGCAAGAACATTTTTAACTCCGCTCGCACTCCGGCTGTCTTTTTAACGTTGATGTTCGTAGCTTATTTCACGTCTGGGTTCTTCACGATGTTTGGTGCTTATTCATTCGCAAACATGTTCAATATTTGCCTTGGGCTGTTTCTTCTGTGCATCGTTTTATGGGCCTATATTCGATTCAGTGGTGAACTGATTGAGATTGGTCAACAGCTCGACACGTTAGCTGAATGGATTTGGGACGAGGTTTTCATGAAGTTGTATGGATATGCTGTTCAACAAGGAACGCAAGCGATTCTGAATAGACAAATGTCACgaaaaaagaataaatga

Transcript

evm.model.HiC_scaffold_28.337

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6GN29	Atlastin-2 OS=Xenopus laevis OX=8355 GN=atl2 PE=2 SV=1
Q6PA06	Atlastin-2 OS=Mus musculus OX=10090 GN=Atl2 PE=1 SV=1
Q95LN3	Atlastin-2 OS=Macaca fascicularis OX=9541 GN=ATL2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004071 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02841 all species →	GBP_C	Guanylate-binding protein, C-terminal domain	Domain	Interproscan
PF14291 all species →	DUF4371	Domain of unknown function (DUF4371)	Family	Interproscan
PF05699 all species →	Dimer_Tnp_hAT	hAT family C-terminal dimerisation region	Domain	Interproscan
PF02263 all species →	GBP	Guanylate-binding protein, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003191 all species →	Domain	Guanylate-binding protein/Atlastin, C-terminal	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR025398 all species →	Domain	Domain of unknown function DUF4371	Interproscan
IPR036543 all species →	Homologous_superfamily	Guanylate-binding protein, C-terminal domain superfamily	Interproscan
IPR008906 all species →	Domain	HAT, C-terminal dimerisation domain	Interproscan
IPR030386 all species →	Domain	GB1/RHD3-type guanine nucleotide-binding (G) domain	Interproscan
IPR052958 all species →	Family	Interferon-induced PKR regulator	Interproscan
IPR015894 all species →	Domain	Guanylate-binding protein, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46289 all species →	52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_28.337.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.