Gene detail

Detailed information of evm.model.HiC_scaffold_28.352 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_28:4300457...4330427
NR annotation: CAH3122294.1, unnamed protein product [Porites lobata]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_28.352

atggcgGGCAATTTTTCCTCTGAGGCAGACTATCATCCGCATTTCTTGTTGCTTCACAACGCACGTCCGGGGACAGAATTCGGCATTGATTACAGTAATTGGTACATTGGACAACTCTTTTGTGGAATACACTCAATACCAAATGGTTTTCATTTTATCTACACAAGTAATGTggacaaagaacagcaacaTTCCCCGAGAAATGGGGTATTTTTATACTTAGACAATTCTGATACTCACTATGTATACAGGACATTTTGGGACGAAGTTAACAATGAAATGAATTGCCCTTTTGAGAAAATAGAGAGGGACTCTTCTGTCTCAGGTATCAATGGCAAGCATTTGGGTCAGTATCCTATGGATgccagaaataaaaaatggaaGAGTCTGACTAGTTTTATAACTAAAAGCACAGTGAAAAGGTTGACTCCATTGTGTGGCAGAATATCCCATATGACTCAAGTAGACTGTACAGCAGAGCTCGGAGAGAAAGAGAAGTCAAAACTTGATATCAAAGATTCTGATTCAAATAATGATGATTTGAGAATAAGATTCACTGCTGTTCCAAAGAAGAAATTCCCTGATGGAGCCACTCCTTCTGAGATTACAAAATATAGTTTAGATCAAAGTTATGCATTAAAAAGCACGCTTTCCTCTTTTGGAGATCGCAATGGAGAAGACGAACTTCTTGCAGAGATACAATTCGCCTTTGTCTGCTTCATGATTGGGCAAATTTATGATGCATTCGAGCACTGGAAGACCGTTATTAGACTCATTTGTTCGTGTGATGAAGCGATGTACGAGAAGCCTGCATTCTTTCTGAAGTTTATAGAAACTAATTATCGAGATAAGAAAGTCATTCTCGAAACATCAAAAAGAAGTGAAGTAGATAAAAACCGGTGGGAAAGAGTCACTCGGCATACacgttttctttctttaaaagaaCAATCATGTAAGAAACATAGGCCTGATCGGATAGAGATAACATTCCTGATTGGCAATGCTGCCCTATTCCAGCATCCCATCATATACTCAAGTGACAGTTTCACGAGTGCAACAGGCTACACAAGAAAGGATGTGTTGCATCGTAATTGCTCATGTCAGTTCTTATTCGGCAGTTTAACTAACAAAGATACCATCAAACAGATTCAGGGAACGATTGATGCCAAAGTATGCATGCAAACAGAAGTTGTCCTCTACAAGAAAGACAAAACTCCATGTtggtttctttttcaaatttcgcCGATTAAAAATGACGGTGAAGATGTGATTCTGTTTTTGATAACATTCAAAGATATTAGTCACCTAAAAGAACCGATTGAAGAGCCGACAGTACGAAAATGGTCCAGATTGGTTGAAAAGTCTCTAGCCAAACACAAAGTAGAACTTCAGAAGAGTACAAACAATGCCAGATCTGTTTTCTTGCAACTCGCAAAGAAAGATGCCTCGAAGAAACAAAAATTGGCACAGCTCATGAGTACATCTTCAATGAACGTGCAGTATTCCTGGGAAGGCAGCAAAAGACCGAAATTCATGATTATGCATCACAGTTTATTCAAAACAATCTGGGACTGGGTGATTCTCATACTGACTCTATACACAGCAGTTGTTGCGCCATTCGTCGTCAGCTTCGAATATCATCAAACTGGCATGGTTGTTTTCAATCTCCTTGTTGACATTGTATTCATCTGTGACGTGGTTATGAATTTCAGAACAACATATACAAATAAAGACAACGAGATCATCTTCAATCCTAAAATGATATGCAATAATTACCTCAGATCTTGGTTTGCTGTTGATTTCGTAGCTGCCTTGCCGTATGGTATTCTCAATCTGATTTACACTGGAGGGGTATGtcttttattattatcttttatAACATATTCTACCAGAAATCTGTTTCGAGGATTACTTAGGAAGAAAGCTCAATATGCAAAAATCAAAGTAGGGTCTGGAATAAATTATTTGAACACGTTAGCCTCGAGTTTCAGTATCCTAATACTGCAGAATACCCACGGTTTCCAAAAAGCAATGTACGTCATTGCATTTCACTATGACAAACCTGCTACAAAATGGAGTTGGATCTTTCTTCTTGCTGAAACTACAAACCAACCATATGAGTTTAAAAATGGAACAAGAGAAATCATCAAGGGATCTGGTCCTAGCATTGCTTCTTTATACATGTCATCGTTATACTATTGCATGAGCAGTTTGACCACGTGTGGTTTTGGCAACATCGCCCCTAACACTACAGCTGAAAAGTTATTTGGCTGTGTCACAATGTTGTTGGGATGTTTCTTATATGCATTCATCTTTGGACAAGTAACAGCAATCATACAGCAGTTGCAATTGCCTTCATCTGTTTATCATCAGAAGCTGAACAACATTCGAAGGTTCATCAAGTTGTATGCTGTACCTCATGATATTGGCGCACGGTTGATTGACTACTTCATGACTACGTGGACAAGAAATAAAGGACTAGAGGTTGAAGAGTGCTTTGCCTCTGTTTCAAAAGCGGTAGATGTGATGCTAATTGGATTACTCCTTCATTCAATGTTTGATGATGACGAAAACATGCGAAAACATATTAAGAATGTCATGAATTGCCACTGTAAATACAACATGAGTCAGACGGGAAATAGATAG

Transcript

evm.model.HiC_scaffold_28.352

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8NCM2	Voltage-gated delayed rectifier potassium channel KCNH5 OS=Homo sapiens OX=9606 GN=KCNH5 PE=1 SV=3
Q920E3	Voltage-gated delayed rectifier potassium channel KCNH5 OS=Mus musculus OX=10090 GN=Kcnh5 PE=1 SV=3
Q9EPI9	Voltage-gated delayed rectifier potassium channel KCNH5 OS=Rattus norvegicus OX=10116 GN=Kcnh5 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002107 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20981 all species →	AAR2_1st	AAR2 N-terminal domain	Domain	Interproscan
PF13426 all species →	PAS_9	PAS domain	Domain	Interproscan
PF07885 all species →	Ion_trans_2	Ion channel	Family	Interproscan
PF05282 all species →	AAR2	AAR2 C-terminal repeat region	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000014 all species →	Domain	PAS domain	Interproscan
IPR035965 all species →	Homologous_superfamily	PAS domain superfamily	Interproscan
IPR000700 all species →	Domain	PAS-associated, C-terminal	Interproscan
IPR038516 all species →	Homologous_superfamily	AAR2, N-terminal domain superfamily	Interproscan
IPR033647 all species →	Domain	AAR2, N-terminal	Interproscan
IPR033648 all species →	Domain	AAR2, C-terminal domain	Interproscan
IPR001610 all species →	Repeat	PAC motif	Interproscan
IPR003949 all species →	Family	Potassium channel, voltage-dependent, EAG	Interproscan
IPR013099 all species →	Domain	Potassium channel domain	Interproscan
IPR038514 all species →	Homologous_superfamily	AAR2, C-terminal domain superfamily	Interproscan
IPR003938 all species →	Family	Potassium channel, voltage-dependent, EAG/ELK/ERG	Interproscan
IPR050818 all species →	Family	Voltage-gated potassium channel family H	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10217 all species →	VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005249 all species →	Molecular Function	voltage-gated potassium channel activity	Interproscan
GO:0006813 all species →	Biological Process	potassium ion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0042391 all species →	Biological Process	regulation of membrane potential	Interproscan
GO:0071805 all species →	Biological Process	potassium ion transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_28.352.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.