Gene detail

Detailed information of evm.model.HiC_scaffold_28.5 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_28:49609...57634
NR annotation: KAF0881284.1, TSR3 protein, partial [Crocuta crocuta]
Species abbreviation CQUIN · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_28.5

ATGGGGAAAAAGAAAGGCAGTGGTTTTGGAAAGCAAAGATCTAGAAATTCTAAAACATGTAAGAATGTGACTAGAGAAACAGATGAATACAGTGGAGAGTCACTCCCTTGTAGacctaggcctaggcctagcgGTGGCTTCAATGGCGGAGAAGATCAAGGTTTGACTGGTTCAATGGATGATAAACTACACTTTCCGTTGGCAATGTGGGACCTAGAACATTGCGATCCTAAAAGATGCACTGGACAAAAGCTTAGTCGTTTTGGATTGCTAAAAATTCTAAAATTGGGCAACAGATTTGATGGCATAGTTTTAAGTCCACTTGGAAAAGAATATGTTTCACCATCAGACAAAGAGATTGTCAATCAAAATGGAGCAGCAGTTATTGACTGTTCATGGGCCAAATTGAATGATACACCATTTAGCAAAATGAGAACGAGACATGCTAGATTACTACCACATTTAGTTGCAGTTAATCCCGTTAACTATGGAAAACCATCAAAATTATCCTGTGTTGAAGCTTTTGCTGCTCTTTTCTTTATAACTGGATTTCCAGACGTTGGCGAACTTCTTCTAAGAAAATTCAAATGGGGAAAAGGGTTCTATGAAGTCAATCGAgagattcttgaaaaatatgCAGCTTGCAGAAATTCAGCAGAAGTAGCAGAGGCTGAGAGAAATTGGTTGAAAGAttgtgaagaagaaaataaacgaATTCATAATATTGATATGATGGACATTGACTTTGAGAAAGAACATTTCAACCCAAATCAGAGTGGGGCAGTTTACAACAGTAAAAAGAATCACgaagaagatgattatgataaagctgatgatgatgacgaagatgatgatgttgacaatgatgatgatgaagaggatgatggtggtgatgaagaAGATGTTGACGACGACGATAATTACCATGAGGAAGCCCATGATGATAAAGTTTATGAAGATTATCATAATGTTGATCAGcatgataataatgacaatCATGATTGtcatgaaaatgaagatgatgaggaaGAAGACGAAAATGACTCAAATgaattatcaaaaataaaaactgaTAACTGTTTGCAACAAAATAAAGACGATGGAAAAACCATAAATATTGTTGAAAAGTACTGTCATGAATACAAGATGAAGATAAATGCTGATAAAACATATGGTGTGATTTTCAACAAAAGTGGTAAAGTCCTTAGGAAGAATAAGTTAATTGTTAATAACGAAgaattaaaaatcaaaaaagaagtaaaatattTAGGTTTCATGTTAGATTGCAACGGTAATTTCCACACTACAATTGAAGATCTTGCAAATAAAGCTAAAAGGGCCCTCTATTCTATCTATAAACTATCGACCTTGAATACCTTGTCAGTAAGTAATATGATAACGACCTTTAATGCTGTTATAAAACCAATATTGTTATACGGTTCTGAGCTTTGGGGGTATCAGTctaaagataataataaaatagAGCTTGCTCAGATCAGCTTCGCGAAACATATTCTTGGGGTGCATCGAAAATCTACAAATTTAGGTGTCTTGGGTGAATTAGGGTTGTATCCATTGCAATTAGAGATGAAGAACAATGCTATTAAATATTACGATTACattcagcaaaataaaaatgaactaTTAAAGGCAACACTAAATCTACAAAAGaaacttaaaataaataacaactgGTTTAAATATGTATCAAACATCTTAAATGAAACTACCTTCGACATTAAACAATTGCCTGTTAAACTTAGTAATAACAATAGTGGTATGAAACGACTGACTagaaaaaataatagaattatTACAATggcaattaaagaaaaattgattaaaaGCTTTGAGATTAATTTCAataatgaaataacaaaatgcAAGAAATTATCACTTTATAAATACATAAAAGACAAGCCTAAGTTGGAAAACTATCTTATATTAGTTCAGAATCGACAACATAGATCAGCTGTGACGCGACTATTAATCAGCGCACATAAACTAAAAATTGAAAGAGGCAGATACACAACAAATAGTGGACTGCCTATCATAACGCAAGCCTGCAATGCGAGTAAGAAGTCTGGTGGAACTGCgagaaaacaaggaaaaaataGAAGAGGCAAGCGGAGAGGCATCAAGGCAAATGAAGGTATTAAACATGCAATGAATGCATTTTTAATGCAGGCTGAATCTTATCAATTACCAAATGATACGTCAACAACATCATGGTCAGAATGGAAAGAACCAAGCTCCTTTTTGCCAACAGAAACTTCTTTAATCGATTCCGCATTGCAGTTCACTGGTCCTCCTAATGAAGCGAGACCGAATAATTTTATTCAGGAAACTGTACTCAACGCAGTAATATTGGCTGCAACAAAAAGTCTAGAAGCATATAATGCTACAGCAAGTCAATCAAATACACAACAATCAACAGTAAAGATGCAGACATCTTTTTCTTCTCATCTGCTGAGGAAAAATACTTTGATTATTTATATCAATGTCACTGCTTCCACCTCATATCCTTCCTTAACAAAAGCTTCAACTTCAAATCGTTCTGTGGCACCTTCATTTTCAAATGACTTATTGACCAGATCTGCTAGCCGAAATGACTTTACAGCCACCAAACCttcaaattttttatcttaCAGCTCAAGCATGAATTTTAGCACAAGTAAACTATCCAATCTGCATACACCACCATTAGAAATATTTCCACAATCTACACAATACATCAGTAGTTCACAACACACAAAGTCAAGTATCTTCATTGCAAATACAACAACTATGCAGCCAATGGTAAAAAGTTTCTCATATCATCAGTTACCATATTTCTTGAACAAATCACATAGTTTTGACAATTCTGTGCTTCCTAGACTTGCTACATCAAATTCACAACATAATATACGTAGTAGCTCTTCAATAACTTCTTTCAATATTCATAAATCATCTAGTTTACGTATTAATAGCTCTCGTTCATTAGTACTCAAATCATCAACTATTTTGCCATTTAacattatttcattttcaaaacattctcaACGTAGCTCCATTTacccatcatcattattatcatcattatccaTGAATAGAGAGTCATCTAGCACAAGGAAGATTCATTTATATCCTTCAAGATCATCAACATTGAAATCAAGGAACCCTCAAATATCCACTACAATAGTCAAGAACAATGACAACAAGACCAAGTTGGGAGGAAAAGATGCAGCAAGTCTTCCAGTTTGGATTGCAATCATTCTTGCAGTTGGTGCATTTTTGGTCATTACTGTTATAAGTGCCGTTGCATACAAAtatgttcagtgGAATAAAGACCATGGTGATTATACTCTCTGGGTGTCTAATCTTGAGTTAAAGCCAGTCAATGCTAGGAATGCTGAAGTGCTAACGTAA

Transcript

evm.model.HiC_scaffold_28.5

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5HZH2	18S rRNA aminocarboxypropyltransferase OS=Mus musculus OX=10090 GN=Tsr3 PE=1 SV=1
Q9UJK0	18S rRNA aminocarboxypropyltransferase OS=Homo sapiens OX=9606 GN=TSR3 PE=1 SV=1
Q12094	18S rRNA aminocarboxypropyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TSR3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005539 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04068 all species →	RLI	Possible Fer4-like domain in RNase L inhibitor, RLI	Family	Interproscan
PF04034 all species →	Ribo_biogen_C	Ribosome biogenesis protein, C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007209 all species →	Domain	RNase L inhibitor RLI-like, possible metal-binding domain	Interproscan
IPR022968 all species →	Family	16S/18S rRNA aminocarboxypropyltransferase Tsr3	Interproscan
IPR007177 all species →	Domain	16S/18S rRNA aminocarboxypropyltransferase Tsr3, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20426 all species →	RIBOSOME BIOGENESIS PROTEIN TSR3 HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0016740 all species →	Molecular Function	transferase activity	Interproscan
GO:0106388 all species →	Molecular Function	18S rRNA aminocarboxypropyltransferase activity	Interproscan
GO:0030490 all species →	Biological Process	maturation of SSU-rRNA	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_28.5.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.