Gene detail

Detailed information of evm.model.HiC_scaffold_28.98 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_28:1235113...1257509
NR annotation: XP_047144370.1, eukaryotic peptide chain release factor GTP-binding subunit ERF3A [Hydra vulgaris]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_28.98

atgaGTCAAAACAGTGCAGCGCCGGACAGTTGGGAAGCTGTCGACCAGAGCGATGGAAGTTCTGGCCTGCCCAAACTGAGTGGCCTAAATGTTTCTGCGAAGCCGTTTGTTCCAAACGTGAATGCTCCTGTTTTTGTACCATCATTTGCCATAGCCCCACAGGCTGAGACTGAGAATACAGGTGCGGTAACTACAAATAATGAAAAGGCAGCTGAAGAAAGAATGAATGGAGCATCTTTATCACCACAACCAGAACAAGAAGCAGAAGCCCCAACTAGCTGGGAGGATAATGAAGAACTACCGGAAGAAAAAGACGTAGAACCAGAGAAACCAGAGGAACCCATTCTTCAGGAAACCGAGCCAGAACCAAAAGAACAAGAGCCCACACCTGTAACTGTAGAAAAAAAATCAAGCCCAGTTGAGGCTGAACCTCCTAAAGCAGCTAAAAAGACAGAAGAAATAGACATTATCGACATGAAAGAACATGTTAATGTTGTATTCATTGGTCATGTTGATGCTGGAAAATCGACAATTGGTGGACACTTATTATTCTTAACTGGTCAAGTTGACAAGAGAACATTAGAAAAATATGAAAGGGAAGCGAAAGAAAAGAACAGAGAAACTTGGTATTTGTCATGGGCGCTTGATACAAACTTGGAAGAAAGAGATAAGGGAAAGACAGTCGAAGTTGGAAGAGCTTCGTTTGATACACCAAACAAACATTTTGTCCTGCTAGATGCCCCTGGTCATAAAAGTTTTGTTCCAAACATGATAGGCGGAGCTGCACAAGCTGACCTTGGTGTTTTGGTCATATCTGCTAGGAAAGGAGAATTCGAAACTGGCTTTGACAGAGGTGGACAAACAAGAGAGCATGCCATGTTAGCAAAAACGGCTGGTGTGAAACATCTTGTAGTCTTAGTCAACAAAATGGACGATTCAACTGTGAATTGGGAAGAATCAAGATACAAGGATATAGAATCAAAGTTAGGTCCATTTCTCAAAAAGACTGGTTTTCGTTCAAACGAGGTCACCTTCATGCCATGTTCAGGGTTTACTGGTGCCAATCTAAGGGATACTGTTGACCCAAAGATCTGTTCTTGGTACAAAGGTACATCATTTTTAGACTTATTGGATCAATTACCTTcattcgctcgaccatatgatgGACCAGTGAAAATATTAGTCAGTGATAGATACAAGGACATGGGAACAATAGTTATTGGAAAAATCGAATCTGGCACTGTCAGAAAAGGGGAGAGTTTCACGCTCATGCCAAACAAAcACATAGTTAAAGTGATGAACATTATTGGTACAGATGAATCAGAGAAAAATTCATGTAAAGCTGGAGAAAATGTAAAATTAAAACTTTCAGGAGTTGAAGAAGAGGATGTAGTCCCCGGTTTTGTCATTTGCTCAGCTGATGCACTTTGTAGCACAGGAAGAATCTTCGAAGCACAGGTTGCAATTCTTGAACATAAGTCGATCATTTGTCCTGGATACACGGCAGTATTACACATACACAACGCAGTGGAGGAAGTCACGCTTATGGCCCTTGTGACAACGTTAGATAAGAAAACTGGAGAAAAAAGCAAACACAGACCGAGATTCGTAAAGCAAGATCAAGTCTGCATTGCACGATTCAAGACTTCAAATGTTATTTGTATGGAGACATTCGCTAAATTCCAGCCAATGGGACGGTTCACTTTACGAGATGAAGTTATTATAGAGATAATTCATAGAGAAACGTATGTTGAATGTACCATGGCTTCACTTCACATAGAACAAATTGGCAAATTTTTTGGGAGTTTGGTTTGGGTTGCTGCAAGGGTGCTGCTCATTTCATCTTCAGCCCTGGTGCCATTCTGCAGTGTGTACAAAGGAGATGTTTGTATTGTTGAGAGGTTGTTCTCCAGTAGTCTTGTTGCCATAGTAAGTTTGTCTGCTCCACGGAAGCTTAAAGTGTGTCATTTCAAGAAAGGAACAGAAATATGCAACTACAGTTATCCAAATACAATTCTTGCTGTGAGGCTCAACAGAGTGAGGCTGCTTGTTGCATTGGAAGAGAGTCTATATATTCACAACATACGAGATATGAAGGTATTACATACAATTCGAGATACACCACCAAATCCAAATGgTTTGTGTGCTCTTTCATCAAATTCGGACAATTGTTACCTGGCATATCCAGGTAGTAATCAGatTGGTGAAATTCAAGTTTTTGACGCTGTTAATCTGCGAGCTGTCACGATGATTCCTGCACATGATTCGCCAGTTGCTAGTCTTGCATTCAATAATGCTGCATCGCTACTTGCTACAGCTTCAGAAAAGGGTACTGTTATACGAGTTTTCTCAATTCCTGAAGGACAAAAAGTATTCGAGTTCCGGCGAGGAGTGAAACGCTGCGCACATATATACTCGCTGTCATTCAGCTTAGATTCGCTGTTTCTAAGTGCTTCAAGTAACACCGAGACAGTGCATATATTCAGATTGGAATCTCCAAAACAAAAGCCAACAGAGGAGCCGCAAACGTGGATGGGATATTTCGGTAAAGCTATTATGACGCCATCAAACTATCTGCCATCGCAAGTCACAGAAGTGTTAGCCCAAGGAAGAGCCTTCTCTATTGtcaaactgccacatgcagGTTTCCGAAACATATGTGCCTTGTCTATAATCAATAAACTGCCTCGCGTACTTGTTGCTAGTGAAGATGGTTATTTGTATGTTTATAACCTGGATCCAGAAGAGGGAGGAGATTGCTCGCTTATTCGACAACACAAATTGCTGCCTGATGAAAGAGAACGATCTGGATCCACGGATTCTGGTCGCGGTGCTGCAGGTTTAGCGGTGAGTTCACCAAGAGGAGGCCAAGGAAGCAGCTCCGCAGCGGCCTCACCACAATACGGAGAACTTTCTGGTCAATCGCCTCGCAGCAATAGAGGATCAAGCTTCGGTGAGAACAACTTGAAACTAAACGATGAGTCTGAATATCCACCACTCACTGTACACAACGAATAG

Transcript

evm.model.HiC_scaffold_28.98

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P15170	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A OS=Homo sapiens OX=9606 GN=GSPT1 PE=1 SV=1
Q8R050	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A OS=Mus musculus OX=10090 GN=Gspt1 PE=1 SV=2
Q8IYD1	Eukaryotic peptide chain release factor GTP-binding subunit ERF3B OS=Homo sapiens OX=9606 GN=GSPT2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005915 (this species only) · gene tree & orthology
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21032 all species →	PROPPIN	PROPPIN	Repeat	Interproscan
PF00009 all species →	GTP_EFTU	Elongation factor Tu GTP binding domain	Domain	Interproscan
PF03143 all species →	GTP_EFTU_D3	Elongation factor Tu C-terminal domain	Domain	Interproscan
PF03144 all species →	GTP_EFTU_D2	Elongation factor Tu domain 2	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050100 all species →	Family	Translation factor GTPase superfamily members	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR048720 all species →	Family	PROPPIN	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000795 all species →	Domain	Translational (tr)-type GTP-binding domain	Interproscan
IPR009000 all species →	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR004160 all species →	Domain	Translation elongation factor EFTu/EF1A, C-terminal	Interproscan
IPR009001 all species →	Homologous_superfamily	Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal	Interproscan
IPR004161 all species →	Domain	Translation elongation factor EFTu-like, domain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23115 all species →	TRANSLATION FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003747 all species →	Molecular Function	translation release factor activity	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0018444 all species →	Cellular Component	translation release factor complex	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03267	ERF3, GSPT; peptide chain release factor subunit 3	-	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.