Detailed information of evm.model.HiC_scaffold_29.1058 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_29:7004058...7053148
NR annotation: XP_038058003.1, telomerase protein component 1-like isoform X2 [Patiria miniata]
Species Chrysaora quinquecirrha · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q99973Telomerase protein component 1 OS=Homo sapiens OX=9606 GN=TEP1 PE=1 SV=2
O08653Telomerase protein component 1 OS=Rattus norvegicus OX=10116 GN=Tep1 PE=1 SV=1
P97499Telomerase protein component 1 OS=Mus musculus OX=10090 GN=Tep1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0011368 (this species only)
Ubiquitin familyUBD|Other|Beta-prp · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00078
all species →		RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF20703
all species →		nSTAND1Novel STAND NTPase 1DomainInterproscan
PF00400
all species →		WD40WD domain, G-beta repeatRepeatInterproscan
PF17908
all species →		APAF1_CAPAF-1 helical domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036322
all species →		Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR019775
all species →		Conserved_siteWD40 repeat, conserved siteInterproscan
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR000477
all species →		DomainReverse transcriptase domainInterproscan
IPR001680
all species →		RepeatWD40 repeatInterproscan
IPR049052
all species →		DomainNovel STAND NTPase 1Interproscan
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR052652
all species →		FamilyTelomerase Complex ComponentInterproscan
IPR041452
all species →		DomainAPAF-1 helical domainInterproscan
IPR043502
all species →		Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR020472
all species →		RepeatG-protein beta WD-40 repeatInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR44791
all species →		TELOMERASE PROTEIN COMPONENT 1 TEP1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0000722
all species →		Biological Processtelomere maintenance via recombinationInterproscan
GO:0003720
all species →		Molecular Functiontelomerase activityInterproscan
GO:0005697
all species →		Cellular Componenttelomerase holoenzyme complexInterproscan
GO:0070034
all species →		Molecular Functiontelomerase RNA bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.HiC_scaffold_29.1058.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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