Detailed information of evm.model.HiC_scaffold_29.1081 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_29:7299805...7316354
NR annotation: XP_028514859.1, LOW QUALITY PROTEIN: U5 small nuclear ribonucleoprotein 40 kDa protein-like [Exaiptasia diaphana]
Species Chrysaora quinquecirrha · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q96DI7U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens OX=9606 GN=SNRNP40 PE=1 SV=1
Q6PE01U5 small nuclear ribonucleoprotein 40 kDa protein OS=Mus musculus OX=10090 GN=Snrnp40 PE=1 SV=1
Q2HJH6U5 small nuclear ribonucleoprotein 40 kDa protein OS=Bos taurus OX=9913 GN=SNRNP40 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006875 (this species only)
Ubiquitin familyUBD|Other|Beta-prp · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400
all species →		WD40WD domain, G-beta repeatRepeatInterproscan
PF14875
all species →		PIP49_NN-term cysteine-rich ER, FAM69DomainInterproscan
PF12260
all species →		PIP49_CProtein-kinase domain of FAM69FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019775
all species →		Conserved_siteWD40 repeat, conserved siteInterproscan
IPR001680
all species →		RepeatWD40 repeatInterproscan
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR029244
all species →		DomainFAM69, N-terminalInterproscan
IPR022049
all species →		DomainFAM69, protein-kinase domainInterproscan
IPR052234
all species →		FamilyU5 snRNP Complex ComponentInterproscan
IPR036322
all species →		Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR020472
all species →		RepeatG-protein beta WD-40 repeatInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR44006
all species →		U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 40 KDA PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0071013
all species →		Cellular Componentcatalytic step 2 spliceosomeInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K18643KATNB1; katanin p80 WD40 repeat-containing subunit B1-Cytoskeleton proteinsko04812deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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