Gene detail

Detailed information of evm.model.HiC_scaffold_29.1168 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_29:8485687...8558956
NR annotation: XP_029200325.2, WD repeat-containing protein 35-like isoform X2 [Acropora millepora]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_29.1168

ATGACCAAAAGCTTCTTTTTCATCGCCTTCCTGGTTTCTACAAAGTTCCTTGCGCTTGCTTCATCAAAATCCGTGCGGTATGAGACTTTGTTATTGACAGATTTGCTGACTAATTACAGCACAACTTCGCGACCTGTAGAGGATAGCAAACAGGCCGTACAGGTCCAAATGGACTTCAAGTTGAGCAAGATAGTTAAACTGGATATTAAAGAACAACAGCTTGTTGTAAATGCGAGGATTCTATTCCAGTGGAACGACCCGGCATTGGTATGGAACACCGCGGACTATAATGGCACAGGCTATGTAAACATGCCGATGACTTCAATATGGACCCCGGATATTTTGCTGTACAACACTGCGTCAGAAAGTAGCGAGTCACATTCCGATGTCTACAAGGCGCATGTGCGTATCGATAACACAGGCCAAGTTGTCTGGATGTCACCTGTGACCTTGAAAGCATCCTGTGACATCAATGTAAAATGGTTTCCATTTGACTCACAATCGTGTTCTCTCCTTTTTGGTTCAATTTCACTCACGAACAACAAACTGTTATTGAAGTTCTACAAGCAGCCTGGGTCAGTCAGTGCCGTAAAAGGCAAGTTCCACTATACAAGTGGAATCTGGAATTTGGAGACTCTTACAACCAAAACGCAGGAACAAAGCTATGATTGTTGCAAGGAACCGTTTTCACTAATCAATTACACGATTGTGCTGAGGCGTTTGCCAACGTACTGGGTTCTATACTTAGTCCTTCCATGCCTGTTTTTAGCAATAATCTCCTTGTGCACGTTCTATATCCCTCCTGAAACCGGGGAACGTATCGGCTATGGCATCACTGTCGTTCTTGCAATGAGCGTTTATCTCCTTGTAATCTCAGACAAATTACCCGAAAAATCCGATACCAAGCCTCTTATTGGAATTATGTACATCGTACTTTTCATAAtcatgattttgattttgatttctgttgttttcacaACACACATCGCATTCAAAGTCACGAAGCCACCACGAAGATTACGTCATCTGTTCTGTAAACGCTGTTACGAGAGTAAAAAGAAAAGACAGGGTGTCGATATTGTGAGCTCTTTGAGAAAACCAGCCACTGCGGAGACGGATATGGGAAGCGAGATGGATTTTGTATCAAAGAGAGATGAAGATACTGGCGACTTCCCTAGAGAGACGCTAAGAAGGAGGATTACGTTGAAACAGCAACTGAGCTTTCTCACTGGTGACCTGGATGAAAGTGAAATAAAGTATCAAGAAGAATGGCGAAGCATTGCTGAGAGGCTTGATAAAATATTCTTTTGGGTCTTTTCTGCTATAACCATTCTCTGTCCTTTCATTATTGTTGGGGGAATTCTCATTTTTCAGATTGCCATACCAAATAATGTTAGACTTGCTTCAATTGCATGGAATCGTGAACAAGGATACATTGCTTGTGGTGGAGAAGATGGTTTATTAAAAGTTCTCAGGCTAGAAACACAGACAGGATCTGATCAGAAAGTGAAGGGTCTTGCAGCTCCAAGCAATTTGTCCATGAATCAAACATTGGAAGGTCATAGTGGTGCAGTTCAAGTTGTTACATGGAATGAACACTTTCAGAAACTCACTACAAGTGACCAATTTGGACTAATCATTGTCTGGACATTATACAAAGGTGATTGGTATGAAGAAATGATCAACAACAGAAACAAAAGTGTTGTACGTGATATGAAATGGAATGCTGATGGGCAGAAAATCTGCATCATTTATGAAGATGgagCCGTGATCTTGGGATCTGTAGATGGAAATCGAATTTGGGGAAAGGAACTGAAAAATGTCCAGCTTTCACATGTCGAGTGGTCCCCTGATGGCAAGACCATATTATTTGGAATAACAAACGGAGAGATACACATCTACGATAACATTGGCAACATGATGGCGAAACTGACCTCATACTGCCTGTCCAATGTTACTGGTGCCGTTCGAGTAGCTGGTCTTGAATGGTACAATGGCTCCTATGGGTATATAGAACCAAATTGCCCCTGTCTGACAGTTTGCTTTGACAATGGTCGAACTCAAATCATGCGTCATGAGATGGATGAGACCCCCGTCCTTATAGACACTGGAATGACTGTTGCATGTATTAAATGGAACCATTGTGGCTCCGTTCTTGCTATTGGTGGATCACAAAAAGTTGTCaatcaagaaaaggaagttAATATTGTACAGTTTTATACTCCATCTGGAGAGCATCTGAGGACATTGAAAGTGCCTGGCAAAGATTTGAAGTCGCTTTCGTGGGAAGGAGGCAGCCTTAGGATATCTCTAGCTGTTGATTCGTTTATCTATTTCGCAAATATCCGACCGGATTACAAGTGGGGCTATTTTGCAAATACCGTCGTATATGCGTTCACGAAACCCGATAGACCAGAATATTGCGTGGTATTCTGGGATACCAAGACGAATGAGCGCTATATAAAATTTGTAAAGAATCTGCTGTCAATTAGTGCTGCTGGAGATCACTGTGTTCTTTCTACAAAGGCTGATGATTCTACGGGACAGTTTGTTCTTGTCCTTTGTAATGCAATTGGTACTCCATTAGATTCTCGCTACATTGATATAGAACCAATTTACGTCACAATGACAGTAAACCACGTGCTTGCTTCatcaaaagaagcattttacgcATGGCAGTACAAAAGCTCGAAAAAATTAACAACATTAGAGCTGCAACAAAATCCTGCCAAACAAGGAAGAAAGGAAGGATCCGAAAAGATGTATCATATTGATGATGTACCTTCGGGAGCAGGCGAAGGAGCAATTGACTATCGAAGAGCAATGTCGCCAACCAATGATCCAGTTTGTTGCATTTGTGCTTCTGACAAAGTGCTGATCATTGGTCGTGAATCTGGAACTATTCATCGATATTCATTACCGAAATTGGCTCTTGAAATGAAACACATTTTGAATTGCAGACCATTTCAAATGTCACTCAACTGTTCTTCAGCGCGATTAGCAATAATAGACATTGCTGGTGTTCTGTCCTTTTTCGATCTGGCCGCGAAGAAGACTGAAGCAAGCGGAGACACAACAATTggtgaacatttgaaatttgaaagaaaagatgTTTGGGATATGAAATGGGCTGACGACAATCCTGAACTGTTTGCCATGATGGAAAAGACAAGAATGTACGTGTTTAGGAGTCTGGATCCTGAGGAGCCAATTCTTTCCTCTGGTTACATCTGTCAATTCAATGATCTGCAGATAAAATCTGTCTTGCTTGACGAAGTCATGAAGGACCCTGGAAATCCAGCGAGGGAGAATTTAATTGATTTTGAGACCAAGtCCCTTCGAGATACCAGAGATCTTTTGGATAAAGTTGGAATAGAAGACGCTTATCAGTTTATCCTTGAAAACTCCCACCCAAGACTTTGGCGTCTCCTTGCAGAGGCTGCGTTAGATCGGCTAGACTTAGAAGTTGCAGAAAAAGCATTCGTTCGTTGTCAAGATTACCAGGGGATCAAATTCACGAAAAGAATTGCTAAACTAGATAGTGAGATGAAAAAATCAGCTGAGATATCTGCGTATTTTCAACGATATGAAGAAGCCGAGAAAATTTACCTTGATATGGACAGAAGGGACCTGGCTGTCGACTTGCGTATGAAACTGGGTGATTGGTTCAGGGTTGTtcagcttttgaaatcaggtggTGGTGGAGATGACGTACTTCTTGAAAAAGCTTGGAACGCCATAGGAGACTATTATGCGGACCGACAAAAATGGCAGAATGCAGTAACGTATTATGTAGAAGGTCGAAACCAAGAAAGACTTGCAGAGTCATATTACATGCTGGAAGATTACGATGGTCTCGAGAAACTGGTCAATACATTACCAGAGAATCATAAATTGCTACCGTCAATTGGCGAAATGTTTACGTCAGTTGGACTATGTGAACAAGCAGTACAAGCATTTGTTAAATGCAGCATGGTAAAAGAAGCAATAGATTGTTGCGTCCTTCTAAATCAGTGGGATCTTGCTATTGATCTTGCAAAACAACACAGTGTCAAAGAAATCGATTCACTTCTGGCAAAATATGCAAGTCATCTAATGGAAAAGGACAAGAAATTAGAAGCTATTGAACTATACCGAAAGGCTAACAACTTTGTTGCTGCTGCTAAACTTCTTTTCGAGcTTGCTGAAGCGAATGCAAAAGCAAGAACCAACCCGGCGAGGTCTAAGAAACTGTATGTCCTAGCTGCTCTTCTTATCGAATCTCACCACGAGCTCGTGAAAAAGAATTCGCAGAAAGCGAACGATGAAAATGGCCGAAAGAGTCGACGAGCGGATGCGAACTCTGCGCTCGCTGGGTTATTGGAAGAAGATCGATCGACAAGTGAAGCCATGCTTATTGATAACGCATGGAGAGGGGCGGAGctGACAAGGCAGAAAATCGATAGGAATATAACTGAActacaaaaatcaaaagacagAGAAAGGAAATCAGTAAATGTCATGAATGCCAAGGCCTTTCAATACGAAAAAATCGCCGAAGAAATACGAAAAAAGAGGATCGAAGTTGAAAGTATGACACGAGAATTCGAAGAGAAAATGAGGATTAAAGAGGAAGAAGAATTCAAACTGGAAAAAGAGTTAGCTGAAATTGCAATTGGTGTAAATATGGAAGCGCAGAAACAGCGAGTGTTGCAGTCTGACAATGCTAGgGACAAATCAATGATTGCGAAAAATGACAAGCTGGTAAGCATATTGCTGgaaaaaatgacaagaaaaacaGTGTCAGAAAGAAAGCAACAGAAATTCGAAAAAGAAATGGCgacaacattgaatcacacggCTTTAAAGATTCGAGAAGAGGGGAGAAAGTTGACGGATGTGAAATCGAGGCTACAGACAAACTCGCAATCTCAAAGAGAGGTCCAGAATGACGCGAATTTTGCTGCATTAAATCGCCAAGCATTGGACAGCGATGAAAAAATCAAATTGGTTGATGCAAGGAGGGCAGAAATACAAAATATCATAACAAAAGAAAGGAAGCAGAGGGGTGCACAAGTAATTGATGAATGGAAaggaagatattttgaaaaaattaatgaaatgaagaaaaaagaagttgAAGATAATATGAAACATTTACAGAAATTCGTCTCCAAGCAAGAGGAACTAGAACAATTACTTTACAACCAAGTAAAAGCTTGTGAATCAGAAAGACGGAAACAAGAACAAAATGTCGAAAGCATAAGGCAAGAACTTTGCGCAGTCAAGAAAGAAAACGCCAAATTACTTAAGGAAACAGCCTTACGATGCAAACGACAAGAAGAAGAATTGATGCAGAAACTTGCACGCGAAGAAGCAGCTTTGAAAAAGGATGAAGAATTAGCAAGGCAACTTGTGGAATTGGGATACAGAGGAAGTGGAGAAGTTCTGAAAAGGGAAGAATTTGAGGCAAGAAAACAAGCTGCAGAAGCAAGCAGACTGTCAAAAAGAAGCCAACAAAAAGTCCTTGCAAGTTCTGGAAAAGACATCACAGACCCATTTCTGCAAGCTATAGCACAAAGAGAAGAAGCCAACCGTAGTGGCAAAATGACTGTAATAAACTTTAccttatctttatctttgcttCAGGAAATATCTGGCTACATTGACTATGCACACAGGCTTAAGACTGAAGATTTTGAGCCATATTTTGCTGGTCGTAAAAGATTGCTTCCAAGGCCGTCAGATCTAAGTTTCTACAACTGGGAAACACAAAAATGCACGTCAAATCCCACGCCAAACTACCAGGTTATAGCAGAAAATGCTTCTGGACTTTTATTCAAGAATAAGAGAGATCGAAAGATATTGAATGTTGATCCAAAGGCCCCAACACCAGGAGACAATTCTGCAAGAATCGTTATAGAGACACCAAAGTACATTCAAGTTGTATTATATGATCATATAACTAGGAGAAAAACTTAA

Transcript

evm.model.HiC_scaffold_29.1168

Protein

evm.model.HiC_scaffold_29.1168

MTKSFFFIAFLVSTKFLALASSKSVRYETLLLTDLLTNYSTTSRPVEDSKQAVQVQMDFKLSKIVKLDIKEQQLVVNARILFQWNDPALVWNTADYNGTGYVNMPMTSIWTPDILLYNTASESSESHSDVYKAHVRIDNTGQVVWMSPVTLKASCDINVKWFPFDSQSCSLLFGSISLTNNKLLLKFYKQPGSVSAVKGKFHYTSGIWNLETLTTKTQEQSYDCCKEPFSLINYTIVLRRLPTYWVLYLVLPCLFLAIISLCTFYIPPETGERIGYGITVVLAMSVYLLVISDKLPEKSDTKPLIGIMYIVLFIIMILILISVVFTTHIAFKVTKPPRRLRHLFCKRCYESKKKRQGVDIVSSLRKPATAETDMGSEMDFVSKRDEDTGDFPRETLRRRITLKQQLSFLTGDLDESEIKYQEEWRSIAERLDKIFFWVFSAITILCPFIIVGGILIFQIAIPNNVRLASIAWNREQGYIACGGEDGLLKVLRLETQTGSDQKVKGLAAPSNLSMNQTLEGHSGAVQVVTWNEHFQKLTTSDQFGLIIVWTLYKGDWYEEMINNRNKSVVRDMKWNADGQKICIIYEDGAVILGSVDGNRIWGKELKNVQLSHVEWSPDGKTILFGITNGEIHIYDNIGNMMAKLTSYCLSNVTGAVRVAGLEWYNGSYGYIEPNCPCLTVCFDNGRTQIMRHEMDETPVLIDTGMTVACIKWNHCGSVLAIGGSQKVVNQEKEVNIVQFYTPSGEHLRTLKVPGKDLKSLSWEGGSLRISLAVDSFIYFANIRPDYKWGYFANTVVYAFTKPDRPEYCVVFWDTKTNERYIKFVKNLLSISAAGDHCVLSTKADDSTGQFVLVLCNAIGTPLDSRYIDIEPIYVTMTVNHVLASSKEAFYAWQYKSSKKLTTLELQQNPAKQGRKEGSEKMYHIDDVPSGAGEGAIDYRRAMSPTNDPVCCICASDKVLIIGRESGTIHRYSLPKLALEMKHILNCRPFQMSLNCSSARLAIIDIAGVLSFFDLAAKKTEASGDTTIGEHLKFERKDVWDMKWADDNPELFAMMEKTRMYVFRSLDPEEPILSSGYICQFNDLQIKSVLLDEVMKDPGNPARENLIDFETKSLRDTRDLLDKVGIEDAYQFILENSHPRLWRLLAEAALDRLDLEVAEKAFVRCQDYQGIKFTKRIAKLDSEMKKSAEISAYFQRYEEAEKIYLDMDRRDLAVDLRMKLGDWFRVVQLLKSGGGGDDVLLEKAWNAIGDYYADRQKWQNAVTYYVEGRNQERLAESYYMLEDYDGLEKLVNTLPENHKLLPSIGEMFTSVGLCEQAVQAFVKCSMVKEAIDCCVLLNQWDLAIDLAKQHSVKEIDSLLAKYASHLMEKDKKLEAIELYRKANNFVAAAKLLFELAEANAKARTNPARSKKLYVLAALLIESHHELVKKNSQKANDENGRKSRRADANSALAGLLEEDRSTSEAMLIDNAWRGAELTRQKIDRNITELQKSKDRERKSVNVMNAKAFQYEKIAEEIRKKRIEVESMTREFEEKMRIKEEEEFKLEKELAEIAIGVNMEAQKQRVLQSDNARDKSMIAKNDKLVSILLEKMTRKTVSERKQQKFEKEMATTLNHTALKIREEGRKLTDVKSRLQTNSQSQREVQNDANFAALNRQALDSDEKIKLVDARRAEIQNIITKERKQRGAQVIDEWKGRYFEKINEMKKKEVEDNMKHLQKFVSKQEELEQLLYNQVKACESERRKQEQNVESIRQELCAVKKENAKLLKETALRCKRQEEELMQKLAREEAALKKDEELARQLVELGYRGSGEVLKREEFEARKQAAEASRLSKRSQQKVLASSGKDITDPFLQAIAQREEANRSGKMTVINFTLSLSLLQEISGYIDYAHRLKTEDFEPYFAGRKRLLPRPSDLSFYNWETQKCTSNPTPNYQVIAENASGLLFKNKRDRKILNVDPKAPTPGDNSARIVIETPKYIQVVLYDHITRRKT

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A6N6J5	WD repeat-containing protein 35 OS=Rattus norvegicus OX=10116 GN=Wdr35 PE=1 SV=1
Q8BND3	WD repeat-containing protein 35 OS=Mus musculus OX=10090 GN=Wdr35 PE=1 SV=3
Q9P2L0	WD repeat-containing protein 35 OS=Homo sapiens OX=9606 GN=WDR35 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002339 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02932 all species →	Neur_chan_memb	Neurotransmitter-gated ion-channel transmembrane region	Family	Interproscan
PF14713 all species →	DUF4464	Domain of unknown function (DUF4464)	Family	Interproscan
PF02931 all species →	Neur_chan_LBD	Neurotransmitter-gated ion-channel ligand binding domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036734 all species →	Homologous_superfamily	Neurotransmitter-gated ion-channel ligand-binding domain superfamily	Interproscan
IPR006201 all species →	Family	Neurotransmitter-gated ion-channel	Interproscan
IPR006029 all species →	Domain	Neurotransmitter-gated ion-channel transmembrane domain	Interproscan
IPR038050 all species →	Homologous_superfamily	Neuronal acetylcholine receptor	Interproscan
IPR027887 all species →	Family	Protein of unknown function DUF4464	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR039857 all species →	Family	Intraflagellar transport protein 122/121 homolog	Interproscan
IPR006202 all species →	Domain	Neurotransmitter-gated ion-channel ligand-binding domain	Interproscan
IPR036719 all species →	Homologous_superfamily	Neurotransmitter-gated ion-channel transmembrane domain superfamily	Interproscan
IPR018000 all species →	Conserved_site	Neurotransmitter-gated ion-channel, conserved site	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12764 all species →	WD REPEAT DOMAIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005230 all species →	Molecular Function	extracellular ligand-gated monoatomic ion channel activity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004888 all species →	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0034220 all species →	Biological Process	monoatomic ion transmembrane transport	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0030991 all species →	Cellular Component	intraciliary transport particle A	Interproscan
GO:0035721 all species →	Biological Process	intraciliary retrograde transport	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan
GO:0061512 all species →	Biological Process	protein localization to cilium	Interproscan
GO:0097730 all species →	Cellular Component	non-motile cilium	Interproscan
GO:1905515 all species →	Biological Process	non-motile cilium assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_29.1168.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.