Gene detail

Detailed information of evm.model.HiC_scaffold_29.1224 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_29:9207691...9230721
NR annotation: BAK40153.1, DNA polymerase beta [Aurelia sp. 1 sensu Dawson et al. (2005)]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_29.1224

atggaaaatttattcgaggagGGACACTGGGTGCACCCTCTTCTGATAAACCAACTAactctactctttcggttagatgagttgaggctgcacgcaggctacagcaaaactgattatgatcatgattatcatgattatcacaataatcatgaccatgacgatgatgatgatgatgatgaccatgattatcgcaatgatcatgaccatgacgatgatgatgatgaagataaccatgattatcacaatgatcatgaccatgacgatgatgatgatgaagataaccatgattatcacaatgatcatgagcatgacgatgatgatgatgattatgaccatgattatcacaatgatcatgaccatgacaataacgacaacgataatgataataacatgctgaatctgacaATTGAAGCAATGAGCAAGAGAAAGGCACCAAAGGATAATCCCAACTCAGAGTTCTGTGATTTTTTAATAGAGCTTGCTGATTATGAGAAAAATGTGGAGAAAAATATGTTCAAGTCAAAGGCCTACAGAAAAGCTGCATCAGTCCTTGCTGATCTTCCAACAAAGATAAAAAGTGGATCTGAAGCAAAGAAGCTTCCTGGAATTGGTGACAAAATATGCAAGAAAATTGACGAGTTTATCAAGACAGGAAAACTTCAGAAACTAGAAAAGATCAGAGCAGATGATAGTACGATAGCCATAAACGAGCTGACAAGAGTTCCTGGAATAGGGCCTGCGGCTGCAAAGAAGTTGGTTGATGCTGGGGTCTGCTCTCTTGatgaattaaagaagaataCTGCTGAGCTAAACCATCACCAGAAAATCGGGCTGAAATATTTGGAAGAGTTTGAAGAGCGTATTCCCCGATCTGAGATGAAAAACCATGAGGAACTGATTCTTGCAGAAACTGTAAAATGCGATTCTGAATTCAAATCTTGTATTTGTGGCAGTTACAGAAGAGGTGCTGATAGCAGTGGAGATATAGATGTTTTGGTTACCCATCCAAGTTTCACATCAAACACAAAGGGCAAAAGCCCCGTGAAGAGTTCAAAGTTAAAACGCCTTGTTGAAAGTCTCGAGAAGGTCAATTATATTACGGATGTTATATCATTAGGAGAATCAAAGTTCGCGGGTGTTTGCAAGTTACCAGGGGATGACTCTAAACACAGAAGACTTGATATAAGATTAATTCCTGCTGATCAGTTCGTGTTTGGAGTTTTATACTTCACTGGCagtgatattttcaatcagAAAATGAGACAAGAGGCTTTGGACAAGGGATTTACGCtcaatgaatactgtataagGCCTGTTGGAAGTAAAGgaaCCCCTGGAGAACCAATACCTGtggaaaacgaaaaagaaatttttgaaataattggAAAGACGTTGTTACACTGGGGGCCGATCACTGCACTTTCAATTATCGCATTCCTGTTTATTTCGACTGTCCTAGCAGAGCTTTTTTGGTACCCACCCGAGACCTTCTGGGCTGTGGTTCATTTCAGTGTTTTCGCTTCTTGGGTTTATCTCATATTGAGAGAATTTCTCAAAGCAGCATTCGATGGCCCTGGAGTCGTCCCATTGGAATGGAGACCGGAATTAGCAAAAGACGAAGATTATCTGCAGTTTTGTTCCTCGTGTAATGGATTCAAGGCCCCCAGATCACACCACTGTAGAAAATGCAAAAGATGTATTATGAAAATGGATCATCATTGCCCTTGGATAAATAACTGCGTTGGTCATAAGAATCATaaaagtttcactttgtttcttgtttttgttgtcATTGGATGCACTCATGCGGCTGTTATTcttatttgttgttgtttgcatCATCTTCTATGGGACGAAGGTTACGTTATGGTGAAAGAATATGAAAATAGCTTACTATCATTTGGTCAAGAATATTTATTGTTATTCCTATTCTCCACTGGTCTCTCTATTGGTGTTGCCGTTGCCGTGTCTATGCTTTTGTATTATCAGGTAAAATCAATTCTAACAAATCAAACTGGTATCGAAGCTTGGATTGTCACTAAAGCTGACCGAGAAAGAAATGATGGATCGACGTTTGTTTATCCATATGACTTGGGAAGATGGAAAAATATTAGACAGGTTATGCAGTGGTCGCATGATTATATTGGTAATGGAATAGTGTGGCCAGTTAAAGAAGGATGTCATCAATACACATTGACGGTAAAGCAACTGGAACAAAAGGCCTTGAAGAGAGACAGAATGATCCTACATAAGATCATCGGTGACTATAATGGTTCATGGTGTCCCGTTAGACATGGCGCTCGTGTTTGCTATGACATGCCATGGACAGACGACCCAAGAATGAAAATCGAGAATAATGACGCTGTTTATGTAACAAGGTGGCGAAAgaAATGGCTTTTCGGAGAGAAAGTTAGAACTAGTAGAAGTGTGAATGGTAAAtatcatatttatttcattaagaGTGGATGA

Transcript

evm.model.HiC_scaffold_29.1224

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q27958	DNA polymerase beta OS=Bos taurus OX=9913 GN=POLB PE=2 SV=3
Q8K409	DNA polymerase beta OS=Mus musculus OX=10090 GN=Polb PE=1 SV=3
P06766	DNA polymerase beta OS=Rattus norvegicus OX=10116 GN=Polb PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005686 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14792 all species →	DNA_pol_B_palm	DNA polymerase beta palm	Domain	Interproscan
PF01529 all species →	DHHC	DHHC palmitoyltransferase	Family	Interproscan
PF14716 all species →	HHH_8	Helix-hairpin-helix domain	Domain	Interproscan
PF10391 all species →	DNA_pol_lambd_f	Fingers domain of DNA polymerase lambda	Domain	Interproscan
PF14791 all species →	DNA_pol_B_thumb	DNA polymerase beta thumb	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027421 all species →	Homologous_superfamily	DNA polymerase lambda lyase domain superfamily	Interproscan
IPR037160 all species →	Homologous_superfamily	DNA polymerase, thumb domain superfamily	Interproscan
IPR043519 all species →	Homologous_superfamily	Nucleotidyltransferase superfamily	Interproscan
IPR019843 all species →	Binding_site	DNA polymerase family X, binding site	Interproscan
IPR002054 all species →	Domain	DNA-directed DNA polymerase X	Interproscan
IPR022312 all species →	Family	DNA polymerase family X	Interproscan
IPR003583 all species →	Domain	Helix-hairpin-helix DNA-binding motif, class 1	Interproscan
IPR028207 all species →	Domain	DNA polymerase beta, palm domain	Interproscan
IPR001594 all species →	Domain	Palmitoyltransferase, DHHC domain	Interproscan
IPR010996 all species →	Domain	DNA polymerase beta-like, N-terminal domain	Interproscan
IPR018944 all species →	Domain	DNA polymerase lambda, fingers domain	Interproscan
IPR002008 all species →	Family	DNA polymerase family X, beta-like	Interproscan
IPR029398 all species →	Domain	DNA polymerase beta, thumb domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11276 all species →	DNA POLYMERASE TYPE-X FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016779 all species →	Molecular Function	nucleotidyltransferase activity	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003887 all species →	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0006284 all species →	Biological Process	base-excision repair	Interproscan
GO:0006303 all species →	Biological Process	double-strand break repair via nonhomologous end joining	Interproscan
GO:0016409 all species →	Molecular Function	palmitoyltransferase activity	Interproscan
GO:0034061 all species →	Molecular Function	DNA polymerase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_29.1224.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.