Gene detail

Detailed information of evm.model.HiC_scaffold_29.1254 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_29:9538767...9546256
NR annotation: KAJ8017929.1, Ubiquitin carboxyl-terminal hydrolase 36 [Holothuria leucospilota]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_29.1254

ATGGAAAAGCAACTCGAGTCAAAAACCATTCAACCTTACTCCAACAGTGATGTTAGTGTTGCCGGTGGTGAGCTCTTCCGCTTGATGCCAAATGGAGATGAAGAAAATGTTGCTCAACTTCTTAGAAAAAGACTGACCAGATGCATTGGTGGGGGTAGACCTAAGAAGCTTGTCAAAAGAGATGGGTCCCtgattgatcaaaataagcTGAAGAACTGTGTTGAAGCTGCTAATCAGCGTTTTGGTATTcaggaaagaaaggaaaagtgGGTTCATGTAGCTCAGTTATATTATGAAAGCTCAGTTGTTTCAGCGAAGAGAATCAAAGGTCTGTACGATCAATTCAGACATCGTCAATTCAGAAAATCATGTGTGAATAACGTAGCGGAAGAAGTCAAGGAACAACACAGTTCTGGGCCAAACATTGACGTGGACTTCGACGAGTGGGACAGCATGTCATTCAGACTATCAGCTTCAACCCCTGGAACACCAACAGCTGAAATGGACTTGGAACCTGGAGAAGAATTCGATTTTACAGAGCATGAAAGCAATTATGATGCTGATAATAACGAAGATAGCATTCACATAGACGAGCAAAGGCAGCAACAGCAGAGTAGATTAGAGTTTCCAAGGAAGATGACTACATTGGCTACAAGTATGAATGACGAGACCAGAGTACCTTACGCAACTCTGACCAATAACACTTGTGCGCCAGCATCGACCAGACTAACCTTTATCAGCAGCTACGTCTCCAACATCTGTGCAAAAATTGCAACAGAAGTAGCGACTAAATGTTTGATGCCTGTAACGGGGGAGCAAACCACGATCGAATATCAAAAACTGGAAAAAGATCCTCCAACTGTAATAGAGGGTGACAGTGAAAAACTGCAATCGACAAATAACGCACAAGAGCCAAGCCACGAAAGACCGTGTGACCAAGGGGCATTTTCGAAAATTGGAATCAACGAAGAGACAATAAATATTTTATGTGACAGTAATTTGCCACCTGACGGtatattcaaagcaaaactacCAGACAATGTGTACCATGAATTGGAAGAGGCATGGCTAGAATACCTTGGAGAAACGAAGTTAACTGGAAGATGGACAGagtattttgcaaaaataattgGCAAGTACAACCCTTATTGTACTTTGGTATTTAAAGGCAACTTCGTATCAAAGAAAACCTCCAGAAAACGTAACTCACCCCTTATCAGGGGGCATGCTATTTGTGCCCAGCGACCACAATGCACAGCCGAAGCGCACTTTTCTATTTCAAAGGGTAAAGAAAACGTGTTGCTGATAGAGTTTAAAGGTGCGATTGCACACGACTTGAGgaaaagaaaggcaagaaagatATGTGGGACAGAAAGAGAGGAGAAGAAAGCCTTGTTTGAAGACAACGTTAACTTGCCACCTTCTGAAGTGTATAGGAATGACTTACGGAACCTGTCTGCCAGTGCTTTTGCTGCGGGTAATCGATCTGGAGCAGGGGCTTCAAAACGAGTGTCGCAAGGAATCAAAAACGAGACACGGAAAATTCATCGTGACGCTAAGCTCTTACATAACCAGTTGTCAGatcttcaaagaaaaattgtgAGGGAAGACGAAGAAACTGCCAAAAGCCTAAAACACACTAACCGAAAGCTTCATGGCTACATCCAATTAATGCAGCTAGTACCAGACTTAAAAGTAGTTCTGCTGCATGAGTCCACCATAAGATTGTATCATGGCGTTGCTCCTAGAGATATACTCTACTTCGATGCAACAGGCAGTGTTGTCCAAAAACTCGCAGATTACAAACGCATCCTTTACTATACTTTGTGCGTCAGACATCCCTTCGGCAAAGCTCCTCCATTGCCGGTTGCTGAGTTTCTTTCAAGTTCACATACTACCGAAGCCATTGGTCAATGTCTCCTATCGcttaaagaaaaggaaaagcaaatttttaatgGAAAGTTTTCTCAACCCGCATTAATACTTGTGGACAACAGTCTTGCGATGATAACAGCTTGTTTGCAAGTATTCAACAACGAAAGTTTCACAAAGTATATCGATCGGTCATTCAGAATAGTGCAAGGCCAAGCAACTGCATCAGACCTGAATCTTACAATTTTACACATATGCTACTCACATAGCATGAAATGGAATAAGCAGATGGTAGATAAGTTTACGAAACAACGCAAAGGAAGGCCTGCTAGAGATGTGAGCAACTTTTTGATGCATTACTTTGCAAGGTTGGTTGAAAGTAGAAGGCTCGATGAGCTTACCCGTTTGGTGAAATTGGGACTTATTCTCCTCAAGAGTAAATTCTTAACTAACAAAGCAATTGATGCGTTAAGAGAAATAGACCAAAGCATCATGGAATTTCCATCCATTCCAGAGTCAATCCAAGGTATTCTGGATGAGTCATCAAGTGTTAATGAAGTTAACATAAGCGagcatgaaaacaaaagcaGTAAGATGGAGTCAActaaagaagaaacagaaaagtCATTGATCGAAAACAAAGGCTCTGCCCTAACACTGTACTGGCAGAACGAGCTGAATGACCTCTCTGCGAGCCTCGTGAAGCcaataaatttgaaaacaaagaaaagtctGGAAATAAATTCCCTTTATAGTCCAGAATATATGGAGTATATAATCAACAGCAAGCTTCCCACGTCAACTCTGTGGTCTAACTTATGCCTTGGAGACTTAACAAGATTCAATGATACGGAGCACAAGAGGGACAAGCGAGCATCCTTTTTCATAGCACGCAACAGTGACATAAATAACAAGACGAGTGGACAAATAGAAGGACTGTTTAGCACTCTCAAGAGGAACCCGTCGCTATTGAAATTGCCTATAGACCATTTCGTACAGCGTCTATGGGAGCTGCGCAAAGGTCTTTCAAGACAGTTTGTGGATGGTTTGTGGGACGGTATTAAGTGCAGAGCAAAGAGCCCAATGAGCAACAAATTCCTTGAAAATATGGCAAACAGGTTGTCAAGCGACCGGACTGATGACATGTCAGAGCCACTAACACGAGAGAAGCCTGTTGAAGAGAGCTGGAACAAGTCGACGCCCAAAAAATCCAGCCAAGATAGCCGAGGGTTTTATCGTCCTGGACAAGGATCCGTGTCATTCTCAAAGCGTTTCAGCGTTTCCGAAGAACCAACGCAAAAGCCTGCAACCACTTCCATCAAGCAGAAGCTGGCATTTAGTAAATTTCGAGATTCCGTATGGCAAAAAGAGGCCGAAAATTCGCCAACAGTTACAGAATGTATGGACAAAGTAAGGAGAAGGTGGAGAGATTTGAGCGAGGAGGAGCAGAACAGCTTCATAGATAAGAAAGAAAGGGAAAAGGCAGAAAGAGAACGTTGTAGCTGCGGCTTATCTTGGGAGCAGAAGCGAGCCCCTATGGTGCAATGCGATTTATGCAAAGTTTGGTTTCATGTGGAATGCCAAGAGATTGACCTTGCATATGCAGAGGCTGCAATGTTTTATCATTGCAGAGGATGTGTGCTGGGCAATTTTATGCCCTTCATAAGATTTCTAGCCCACACCAGTGTCAACCTTGACTTGCATAACACTGAGGTCATAAAAAGACAGTATGGTAGATGGAATGAAATGTCATTAGCGGATCAGAATGCAGTAAATGCAGTTTCAATCGAAGACACCAACCAACCTCTTGCACTATCACAAAGAGTATACTCAGTCAGAGGGATACGAAATCCCTTCATGACAACCTGCTGGATGAGTTCAATCTTGCAAATAATATGCGGCAGTTCATTATACCATGTAATTACATCATGCAAATCCGAAGTAACTGTGTTGCTTGGCGGGATACACGAGCAGCTGAAAGCGAAAGGGAGCCGATCACCGCTACCCATAACTGATGAAATGAACCATCTTTGCAACTTGGTTGGCTACCAGATGTCCGAAACAGAGCAGCTTGATAGCCTTGAATTTCTCACCTTCATAATTCAAGCACTGCAAGCCAAAACTTCGCAAGAATTTATTGAAGATCTAATCTGTCCGAAGGTGACAAAGCTTCTCATTTGCAGATCATGCCCAGCTATGCGTGGAGACTTATTCCGACGGGGCTATTTTCAAGTACATGTGCCAGAATGGAAAGAGCCCCTGTGGCTTTCATCCCTGATTTGGGACTCTGCTGCCTGTCAGTACTCCCTGGAAAGCCAGGGACCAGGGTGCAATTGCGCCAAACATAAGGCAATGAATATTAAAGGAAAAATGAAGGAAGCAAGCAAAAGTACAGGTACAGAACAAGGCATGTACTATTACTTGTCTTTCCTGCTGAATGCACCTTCAATTCTATCCCAAGATTTTACGAAAACAACATACCTCCTATTTTACGTCAGAGACGATCATTTCGAATCGGACAAAGGCAATGCAACAAATGAAGACAGTGAAGAGAATGTAAAAATGCATCAACCCTGGTTCTTAGATGAAAGAAATAGACAGGAGGTCGAGCAGTATTGGAATGGACAGGCAAATATACCTGTACCAGCTACATCATCATTTACATCACAAGATATACAGACGTTGTCAGGCAACTCCTGGATCAATGACATATGCATTCAATCTTGCACTTACTCATTTTGTGATGAGGTCTGTGATCTAGGCCTATCTGTTGCAGCAACTTCTACTTACTTCGTGACATCCTTGATAGAGAACAGACAAACACAGGAAATCTATAATATCATGATAGACCCGAACTGGTTGAAAAAAGATGTCATTATCATTCCTGTGCACCATCGCTCAACAACTGGCTCTAATCTTCACTGGTCATCAGcgggaatttttccaaaaaacagAACTATAGTCTATTGTGACTCTCTGCACGTTTCAAGGCCTACCATCTTCTCTATTATACTTAGTGTGATAAAGAGATGGTGcaatgaacatcaaatacgaTTTACACTCAGTGAGTGGTGTTTGATCAGCAGTAACCAGGTAGCTAAACAGGTAAATGGCTACGACTGTGGTGCATACACCTGCCTGAATATATACTGCCTTCTGCATCAAGAACTCTGGCTGCCATCACCAGATGACATTATCGACATTCGGGCATGGATCGTTCACAGAATTGTATATTCAAGAGGAAAGAAAAGCACAGGAAACACAAAAAATGTAGCATTTTTGCCTGTAGAAACAGCCCTAGTAACAAAGGACCAGATAAAGACAGATTTCGCATTCGATGTATTAAAAGACGGCGAGAACACCTTTGCCTGCCTAAAACGCCTTGTTTCTCTGACCCAAGGGAATAGcgaaacagctgattttgagaaaattgaagtGGAGACAGTACCAGAGCCAGAGACAGCCCCCGAAACTCAAAAGCTAATTAACGAAGAGCCTCTGGGTGAAGAGTTGGTTGACTCTGAGAAAGAAGACGTTTGTAACAGCAGCGATGACGAAAGTAGCTCTGATGAGTCACTGATGGACGACGACCCGGTTGCAATAAGCTTTACCAATAACAAAAGTAATGTTAAAAATGATATTCTACACGCCCGTCAAAATCTCAGTGCGGGTACTCTAGTTTCGGAACGGATGGCTGCTGCGCTAACCAGCAAAACTCTATTCCTCTCTCTTGCAATTAAAGAACTGAATCTATTACGAAGAAGATATGGGGAGATGCAACTTAATAGTTACATAAGACACATGCAGAAAATGCTAGTGTACTACAGAGAGCCATCTGGACGCTTGTTTGATTATGGGGGTTACGAGACAGAGTATTTTCAAGAGAAATTTATGTTATCTACAActaatttcttcaactttgtgtTGCTGCCAGAGTTGCTGACACGGTATGAAATGGAAAGGAATATTTGCTCATATAAAGATGCATTGAAGTTTGTGTATGGAAAAGAAGATGTTCAGACAAGTGTGTTCCATCGAGATCTTCTTTTGAAGGATATCAAATCTGCTTTTGTGTGGCCTATCAACCTGCCGAAATCAAAGGGTGAAAAGTTTTACATCCAAGTTGTAGACCGTGAGATCCTCAAAGACTTCAGTCAGGTGAAATGCCTGTTCTGGGAACAAACTCCTGATCAACAAGTGGAGATAACGAGAAATTTCGGAGAGAATCACAAAGACATGTCAACAGAAGACTGCATAATTATAACAGATGCGAATGATAATATGCCGGGAAACTACATCTACCATTGCATCATAAACAAAGAGACCAAAGAAAATCCAACAGAGATTTCTATACGTGAAGTGATTGAAAAGGTTCTAGAATTGGCCGAGAAAAACAATGTGGCATCTATTTCTTTTGATCTATTAAAAATTCTGAATCAAAAAGGACAACCGGACTGGAAGAAAACATCACTCGCGTACTTACAATCATTCCATGCATTCGTCAAGGAGAAGTCACCCGGTGGAAGAAACATAAATATTATACGCATTATGTCAACTAGCAGGCTTTTCCACGCTGCTTCGAAGAACCAAATGAAAGAGATAACGAAAAAGAATCGATAA

Transcript

evm.model.HiC_scaffold_29.1254

Protein

evm.model.HiC_scaffold_29.1254

MEKQLESKTIQPYSNSDVSVAGGELFRLMPNGDEENVAQLLRKRLTRCIGGGRPKKLVKRDGSLIDQNKLKNCVEAANQRFGIQERKEKWVHVAQLYYESSVVSAKRIKGLYDQFRHRQFRKSCVNNVAEEVKEQHSSGPNIDVDFDEWDSMSFRLSASTPGTPTAEMDLEPGEEFDFTEHESNYDADNNEDSIHIDEQRQQQQSRLEFPRKMTTLATSMNDETRVPYATLTNNTCAPASTRLTFISSYVSNICAKIATEVATKCLMPVTGEQTTIEYQKLEKDPPTVIEGDSEKLQSTNNAQEPSHERPCDQGAFSKIGINEETINILCDSNLPPDGIFKAKLPDNVYHELEEAWLEYLGETKLTGRWTEYFAKIIGKYNPYCTLVFKGNFVSKKTSRKRNSPLIRGHAICAQRPQCTAEAHFSISKGKENVLLIEFKGAIAHDLRKRKARKICGTEREEKKALFEDNVNLPPSEVYRNDLRNLSASAFAAGNRSGAGASKRVSQGIKNETRKIHRDAKLLHNQLSDLQRKIVREDEETAKSLKHTNRKLHGYIQLMQLVPDLKVVLLHESTIRLYHGVAPRDILYFDATGSVVQKLADYKRILYYTLCVRHPFGKAPPLPVAEFLSSSHTTEAIGQCLLSLKEKEKQIFNGKFSQPALILVDNSLAMITACLQVFNNESFTKYIDRSFRIVQGQATASDLNLTILHICYSHSMKWNKQMVDKFTKQRKGRPARDVSNFLMHYFARLVESRRLDELTRLVKLGLILLKSKFLTNKAIDALREIDQSIMEFPSIPESIQGILDESSSVNEVNISEHENKSSKMESTKEETEKSLIENKGSALTLYWQNELNDLSASLVKPINLKTKKSLEINSLYSPEYMEYIINSKLPTSTLWSNLCLGDLTRFNDTEHKRDKRASFFIARNSDINNKTSGQIEGLFSTLKRNPSLLKLPIDHFVQRLWELRKGLSRQFVDGLWDGIKCRAKSPMSNKFLENMANRLSSDRTDDMSEPLTREKPVEESWNKSTPKKSSQDSRGFYRPGQGSVSFSKRFSVSEEPTQKPATTSIKQKLAFSKFRDSVWQKEAENSPTVTECMDKVRRRWRDLSEEEQNSFIDKKEREKAERERCSCGLSWEQKRAPMVQCDLCKVWFHVECQEIDLAYAEAAMFYHCRGCVLGNFMPFIRFLAHTSVNLDLHNTEVIKRQYGRWNEMSLADQNAVNAVSIEDTNQPLALSQRVYSVRGIRNPFMTTCWMSSILQIICGSSLYHVITSCKSEVTVLLGGIHEQLKAKGSRSPLPITDEMNHLCNLVGYQMSETEQLDSLEFLTFIIQALQAKTSQEFIEDLICPKVTKLLICRSCPAMRGDLFRRGYFQVHVPEWKEPLWLSSLIWDSAACQYSLESQGPGCNCAKHKAMNIKGKMKEASKSTGTEQGMYYYLSFLLNAPSILSQDFTKTTYLLFYVRDDHFESDKGNATNEDSEENVKMHQPWFLDERNRQEVEQYWNGQANIPVPATSSFTSQDIQTLSGNSWINDICIQSCTYSFCDEVCDLGLSVAATSTYFVTSLIENRQTQEIYNIMIDPNWLKKDVIIIPVHHRSTTGSNLHWSSAGIFPKNRTIVYCDSLHVSRPTIFSIILSVIKRWCNEHQIRFTLSEWCLISSNQVAKQVNGYDCGAYTCLNIYCLLHQELWLPSPDDIIDIRAWIVHRIVYSRGKKSTGNTKNVAFLPVETALVTKDQIKTDFAFDVLKDGENTFACLKRLVSLTQGNSETADFEKIEVETVPEPETAPETQKLINEEPLGEELVDSEKEDVCNSSDDESSSDESLMDDDPVAISFTNNKSNVKNDILHARQNLSAGTLVSERMAAALTSKTLFLSLAIKELNLLRRRYGEMQLNSYIRHMQKMLVYYREPSGRLFDYGGYETEYFQEKFMLSTTNFFNFVLLPELLTRYEMERNICSYKDALKFVYGKEDVQTSVFHRDLLLKDIKSAFVWPINLPKSKGEKFYIQVVDREILKDFSQVKCLFWEQTPDQQVEITRNFGENHKDMSTEDCIIITDANDNMPGNYIYHCIINKETKENPTEISIREVIEKVLELAEKNNVASISFDLLKILNQKGQPDWKKTSLAYLQSFHAFVKEKSPGGRNINIIRIMSTSRLFHAASKNQMKEITKKNR

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000547 (this species only)
Ubiquitin family	DUB\|ULP\|ULP · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02902 all species →	Peptidase_C48	Ulp1 protease family, C-terminal catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001965 all species →	Domain	Zinc finger, PHD-type	Interproscan
IPR019786 all species →	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan
IPR043472 all species →	Homologous_superfamily	Macro domain-like	Interproscan
IPR036910 all species →	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR003653 all species →	Domain	Ulp1 protease family, C-terminal catalytic domain	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12606 all species →	SENTRIN/SUMO-SPECIFIC PROTEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008234 all species →	Molecular Function	cysteine-type peptidase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0016926 all species →	Biological Process	protein desumoylation	Interproscan
GO:0016929 all species →	Molecular Function	deSUMOylase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_29.1254.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.