Gene detail

Detailed information of evm.model.HiC_scaffold_29.1747 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_29:14732067...14737475
NR annotation: XP_033114589.1, dystroglycan-like [Anneissia japonica]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_29.1747

ATGCCAAATGAAAGTCAGTATGCTGTGAAACCTCTAAGAAGATGGTTTATAGCAGAAATAATTGCTTTTACAATCTTGTCTATATGCATTTGCAATGGATTTGATGCATGGGAAAACCTGCGTCATGCCAACATTAGGAAAGTCTCCGTTGGACATTTTTTCACGGATGAAATACCTTATGAAGCATTTGGATGCAATCTCACAAGGGTTCAGGTTGTGGAAAGAAATATGCATAGTTTACCTGGCTGGATGAATGTTAATGCAGACACTGGTCAGATTTCCGGAGTTCCCCAAGAGGATGATATTGGAGCATATCATCTTCTCTTCACTGGGATTGGCATCaatgaaaaatttcaagaacatGTATGTAAGTCGTTTGCTAAGATCTTTATTGTCGAAGTAGTACAGCACAGCTTGATGGAGTCACTTGGCAAACTGATTCAGAATGCATCTCATAATAATTTTGAAGAGGAACTGTCAGGCTGTGGATACTATTCCTCAGTTGTGGTTGGGACATTATCAGTTCATCACAAAAAAGATccaaaatttataaactttgcTGAATTCGCGAAGCATCTACAGATGGTCTTAAACATATCGATTGATTTGATTCAAATACTCAAGGAAACTAACTCATTGTTATTCTTCAGACAGTTGAAGAAGATATCAATCTTGCATTCAGAAGATCATACTAATTATCGTATTTCTCAAAATAAACCAGTGTATATATCATGGCCAATAACATGCGGTGCTTTCAACGTTGGCTCGTACCTTACTCATAAGGTGTATCGTAGGAGTATTGAATATTCGTCAGATCTTTCGATTGGAAGCTTTCATTTAACTTCTGGTGATTATGGTGGACTACCTCATCTACGCAAACGTCGTGGTGTATTTTTTGGTTCCATAACTGCACTTGAAGGCACACCAGTAGAAACATCGGCACTACCTTCACGATTTTCAACTTCTGTTTTATTTACATCAGTTAAATCAAGTATTAATCGGAAAAATTCTACTTCACATAAAGAAATGAACTCTGCAatatcttcaatttcaaataaaaCTGTTTTTAGTCAAATTTCCAGTCAACCAATTCTTCACACAAAATCAGTTCGATCCAGTATGGCTGAAACTTCATCTGCACTTACACTGTCATCATATTTATCGCAACAATCAACCTTGGTCTCATCAAAGACTCCTTCGATACCGTATTCAACACTGGATGTAATGCAAACATCCGTAACTGAAATAGCGACTTCGAAAACATTTATAATGAATATTTCACGTTCCTCGAGTACAATAGAGCAATCAAGTCTGACTCAGAACATTTCAGCTTCGTCGTCTTTCAAACGAACGGAAAGTTTACCTGGTTCTTCAGCTCCTTTGATGTCAACGAGCAGTCCAAATTCTACAGCAGGTTTATTCTCAAGCTCAATAATATCTTATCATTCACCATCTAAAAGCCTTTATATTACGAAAACGATCCCAGACACACTGTTACCAACATCCAAAACTCTTACGAAATCTACCGTATTTTCAGAGACATTGGCTCCAAGCAGGACTAGCTATACAAAGTCATCGATTTTAAATTCAACAACAGTTTCTTCGCATTCCGAAATAACTTCCTCAGCAAGAACAACTTCCCCATTTATGACTAGCAATACAGGAATCTTAAATGCTTCTTCAGTGTTACCTACTGTGTCATCAAGACTTCGGCCCACCTCAGCTACAGGTACATTGGCCACAAATACCACTTACTACCCAACATTGCAAACTTCAAAGTCGACTGCATTTTCAGCATACTCAGAGATAGCATCCTCATCTCCCAGTCAAACTTATAATACCAGTGAAATTTCTCTAGTAATGACTAGTTATACAAAAGTGCCATATTCGTCAGTGTCACCAACAACGGTTAAAAGGACTCTTTCTTCGGCCAGAATATCTTCAAGTACTTTCTATACGAATTATTCTGTCCCTATCAATGAAACTGTTGTACCTGCATCAAGCAGAAGTTTTTTCACACCGTCTAAACATGTTATGTTATCGTCTGCCAGATCTATAATGCCCTCCCTTGAGCCAACAACAAGTTATTCCATATCTCAAATAACAGTTTCAAAGAGTCTCCCCAATGGTAGCACAAGTATGGAGAAAACAATGGCTACAGTTTTTTCTGAAAGTATTCAAACAGCAAGTATGACTTCTAAACAGATATATAGTTCTTCAGCACATTTATCGTCTTCAACAAATATGTTAAAACCTTCACCTCCAACCAGTGGTGCCACATCATCTGTACTAGAAACTCAATATTTTACATCAGAGGCAAAGTCGCTTATTTTTACAACAGATACTAGCTTCGTAACTCAAGCTACTACTCAAGTCCCAGTCAATAATTCTTCAATGAGAATGATTAGCTCGGTGCCAGCAAGTACAATCTCAAGAAGTTTCCCCTCTGGTTTATCAGTACCTACATATGAAACAACATATCATTCCTCAAGATTTACTCACTCTATTCCTATCAGTACCTCAATATTGTCGTCTACACAAGAAAAGGTGTCTTCACCTTTCCCCAGTCTATTCACACGGACCACCCAAACTGTGATACCAAGCTATTCAAGTGTTGCTATTTCTAAACAAATGTCAGAGAAATCTTCCCAGTCATCATTTTGGGATGTTAGAACAATTCAGTCTACAAGAGCAATATCTGAATCATCCAGAATTACGCAGTCAGCTATTTTTAGTAAATCAGAATCTGTATGCTGTTTAAGCTCAAAAGGTTATTTCAATTCTACGTTTTTGTCAGTGACATCATCAACTCAGTCAACAATCAAGCCAGCATCTTCAGGTGAGTCAACATTCATGGCAACATCATCAAGTCAGTCGGCATACCAACACCCTTCGTCAATTCAGTCGACATTCAAGCCAACGATATCTTCAAAGTTTTCTAGACAAACTTCCAGATTGTCAATTACAACAACTGTAAAAGACAGCATGATACGAATCAGTTCCAGCAAAGAATCATCAAGGCCAATGTATAGttcaatatcaatttcatctGTATCAAGTTTTATTCCTTCTTTGAGATTCGCATCTGGATCTACCTATgtcgacttttcttcaaaaagacaAACCGTGAATACATCATACGCTACAAGAGTCCCACAGTCTTTGTTTACGATTGCATCTTCCTTGTTTACGATTTCTTCTTTGGATATATCATTGAATGGAACGTCAGCACTACCCTCAACTGCAATCAAGACTTCTGATGCTTATTCAAGAAGCAGCCGCGTACCCAATTCAGGTCCGCAAATGTTAAACAGCATTGGAAGATTAACTGCTTATGTGGGAAGATTATTTACATTGAAAATACCTTACGACACCTTCTACGATTTAGAGGACGGTTTTACAAATAACCTGAAATTGATATGCCGTTACTCCAATGGAAATCCGATTCCAGCAGGTTTTTGGATAAAATTTGATAACAATAGCCAAACGATTTCTGGACTACCTTTAGCTTCTGATCAAACTTCTCAAGCCTTGCACGGCTTGGAATTGGAGTTAGTGGCTTTTGATTCATTGGGATACTCCGCAAGAGATGTAATTAATATTTATATACAAAAGGTACAAGTGTCGTTCCTGTTTTCAATCACCGCTACCATAGAATATGACTATACAAGTTTTCTTCAAGATAGTTCTCTTAGAATAAAACTACTGAATCGTATAATCCAGTTTTACAATACTTCTCAGCCTCAGGATTATTATGCATTGAGAATTCGCAACGGTTCAGTTATGTTTAGCTGGAGTGATACTAGTGTTGGTTCTACAACATGCAATAAGACATTAATCGACAGTATCTTTAGAAAAGTATGGCTATCATCTGGAAGTCCAACGCCAGAATTTTCACATGCTTTGCTTCCTGAATTCCCAGTACTAAAGTTGAACTTGAGCTATCAGGGTGTTTGTTTACTGCCACCCATTGTTACACCTACTCCAACAAGACCAGGTGCAGGACAGGGAAGTACGAATGTATTTGTTACGTATGTCGTACCTTTACTGGCAGTTGCATTTATATGTGCAGTCATCATTGCTACTCTTGTCTTCTTGTCAAAGAGAAGAAAATCAAAGCCATCATTTCTTGATAAATACACCTTCAAAAAAGGACAGCCAGTTCTTCTTCCTGAAGAACACGAGTTAAAGACATTCCCTGCGTCTGCAGTCATACTTCCAGAAGATtatctttatgaaaaaaaattaGACAAAGACAAGCTCTATTCAGAAGATTACATTAGTGATCcttttgatgatgaagatggtttgataaaagaaaatgaAGCATACGGTTTGAAACCTTTTGTTAACCCACCACCTCCTTACCATCCTGAGCCAAAACGAGGGAAGTCGATCAGAGAAGATTATGAATCTCCTTATCTCTATCCACCGCCAACATATCAATTACCACCAATGTATATTCAACCTGAAAATATGACGTCAGAAGTCTAG

Transcript

evm.model.HiC_scaffold_29.1747

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003875 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05454 all species →	DAG1	Dystroglycan (Dystrophin-associated glycoprotein 1)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR008465 all species →	Domain	Dystroglycan, C-terminal	Interproscan
IPR006644 all species →	Domain	Dystroglycan-type cadherin-like	Interproscan
IPR015919 all species →	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR030398 all species →	Domain	DG-type SEA domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21559 all species →	DYSTROGLYCAN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016010 all species →	Cellular Component	dystrophin-associated glycoprotein complex	Interproscan
GO:0002009 all species →	Biological Process	morphogenesis of an epithelium	Interproscan
GO:0007411 all species →	Biological Process	axon guidance	Interproscan
GO:0016011 all species →	Cellular Component	dystroglycan complex	Interproscan
GO:0016203 all species →	Biological Process	muscle attachment	Interproscan
GO:0021675 all species →	Biological Process	nerve development	Interproscan
GO:0042383 all species →	Cellular Component	sarcolemma	Interproscan
GO:0043236 all species →	Molecular Function	laminin binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_29.1747.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.