Detailed information of evm.model.HiC_scaffold_29.1791 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_29:15246771...15251283
NR annotation: XP_002168423.2, presenilins-associated rhomboid-like protein, mitochondrial [Hydra vulgaris]
Species Chrysaora quinquecirrha · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q3B8P0Presenilin-associated rhomboid-like protein, mitochondrial OS=Rattus norvegicus OX=10116 GN=Parl PE=2 SV=1
Q2KHV4Presenilin-associated rhomboid-like protein, mitochondrial OS=Bos taurus OX=9913 GN=PARL PE=2 SV=1
Q9H300Presenilin-associated rhomboid-like protein, mitochondrial OS=Homo sapiens OX=9606 GN=PARL PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006085 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01694
all species →		RhomboidRhomboid familyFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR022764
all species →		DomainPeptidase S54, rhomboid domainInterproscan
IPR035952
all species →		Homologous_superfamilyRhomboid-like superfamilyInterproscan
IPR050925
all species →		FamilyRhomboid protease S54Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR43731
all species →		RHOMBOID PROTEASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004252
all species →		Molecular Functionserine-type endopeptidase activityInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0006465
all species →		Biological Processsignal peptide processingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.HiC_scaffold_29.1791.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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