Gene detail

Detailed information of evm.model.HiC_scaffold_29.623 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_29:4009409...4012862
NR annotation: PFX16501.1, Transposon TX1 uncharacterized 149 kDa protein [Stylophora pistillata]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_29.623

ATGTATCagccaactgtaaataaagtattaaaaaaaaaacctaCTGCAACTGTAGCGTTTGCAAGATTGAAGCGTCCGCACACTGTCTCCTTACGTGTGCCTTCTGGCTGCCGTGTCGAACTGAAAGAAATCTATGACATCTGTTCTGATCTCTTTGAAATCCGTCCAGTCTCTTTAAGCAAAAGCACAAATGGCGATATAATCGTAACTAAAAATAATCAGGAGCAGAAGAAGGAAATCCTAAAGTTTGCTGCTGTCAAAGTAAAATCTGGTGAAACCTTGCACATTTTTTATCCTTCCTCGCCTATTTCTTTCGTTAGTATCTACAGCGTTCCTTATGAGCTGCACAATGATGCCATCATCCGTAAGTTACAGAAGTATGGGAAACTTCATAGCATCAGAAGATGTCACCACGCGGAGATGCCACAGTGCGAGAACGGAATCCGGAGCTTGAGAGTGACACTCAAAAAATGCATTCCTTCCTTCATACATTTTGGAAGTGAGTCGTTTCGGGTACACTACAGCGGTCAACTTGAGACGTGCGGAAGATGCGACCAATACAGTCACAATGCTAACAGATGCCAACGGTCTAGATGTTTCAACTGTGGGATGATGGATCATACCATCACTGCTTGTCCTCTCAACTGTATGTGCGCCATATGCGGCTCAGCTGGACACGATATCTCAGAGTGTGTGGAGTGGACACCTCATGAGGACGATTTTGACAACTTTGGCTTAGTTTACCACACCCAACCGGCAGAGCATAAAAAAAACGAAGGAGAGGCCAATGAAGAGGCAAGGATTGAAGCAGTTGAcggtgaagaagatgatgacgcCAACGCAGAAGAGGAAAATGAGGAAGATGGTAATTGTGAAGAAGAACAGGATGATGGAaacgatgctgatgatgatgacgatgaggaagaagaagatgaggcTACGAGCACAGCCACAGCGCTTGCAACCAACACTGAAGAACAACCAACTCCATCTGCACCATCAAACCCTACCCCGCCCAACCCCTTCATAAATATTGCATTCAACCATCCAGGACCTAAAACTAAATTCTCCTTCAATCCATCCCCCAACATATTCCCTGATACTCAGCGCAATTCTCTGGAGGAGCTTTTCAGTAAACAGCCACCCAAAATTCATCTAAACTCAACATCAGGAATTGTACAATCCACTCTTCAATCTGAACCACCCAAACCACAGAGACCCCCTAAAAAGTCATCACGGAAACCATCACTTCCTCCAAAACCATCACCCCCAAAACCAACAGAGCAAGAAAAAGTTACTCAACCTGATGCAAGCAGCTCTTCAAAGCGTGCTCTTGAAGAGTCTTCTGGATCCTCTACTGTAAGCAGTGTTGTTGGAAGCAAAGATAAGAAGAAAAGCACTGCTCGCCCTACAAAGAAGAAGGCGGAGCTATCCCTGGACGTTCGCAAACGTCAGACCATACTCCAGTgggttaaaaaccaaaaacaggacGTTATCTTCTTGCAAGAAACGCACCTTTCCTCTGCTGCTCTTGATCAGTTAAAACAGGAATGGGAAGGCCAAGTGTTTCTGTCTCCTGGCAACAACCACAGCACAGGAGTTTGCACGCTGTTTTCCCGtagatcaaatttcaaatttaattctCAATCCCATGATCTTGCTGGACGGTATTTGAATCTCATATGCGACTTTGGCGAGGCACATATTcaattttgcaacatttatgCGCCTAACCATGTTTCTCAACGTAAGGACTTTTTTGAATCCTTGCACGCTGTTCTGAAAGGGGGCATCCCTACAGTTTTCGGTGGAGATTTCAATTGCATCGAAGACTCCTTTTTAGACAAAAACGGTGGAGACTCCGATTTAGCAATAACAGCTTTAAAAGCTTTGCAACTGCTCAACCTTACGTACGATTTTAAGGATGTTTGCCGACATTTAAATCCGTCAACACGTAATTTCACATGGACCAATCCTGATGGTTCTATCTCGTGTCGGTTAGACAAATTTTAtgtgtctggagatatttttGGCAATTGTAGTTATTCCCACATAGTGTTCTTTCCCTATTCCGATCATGATGCTCCAAGCATCTCGTTTAGACTCccgaactctttgaaaaagggtccGGGGGTTTGGAAATTTAACACCTCTCTTTTAGATAATCCTATTTTTGTAGATGAAATCAAATCTTTCTGGTCCCATTGGCAGCTACGGAAGATTGACTTCCGAGATTTAAATGCCTGGTGGGATATTGGGAAGCGCAAAATTAAACATATTGCTATGAAACTCTCTAAGTGCTTAGCACGGGAACGTCGCCAAAAGCGAGCCCGTTTAGAAAAGAAGCTCAGGGATCTTAGCACCTTAAAGCCGTCTAGGCCTGTTTTAGATGCAATCGAGGCTCTAAAGTCTGACATTACAGACCTTGATAACACTCTCGTTCATGGTGCAAGAATTCGTTCAAAGGAACGCTTCTACACCGAGTTTGAAAAGCCTTCCaaatacttttactctttgGAAAATTCTCGTCAAAGCTCTAAAGTCATTTCTGCATTAAAATACGATGGCAGAACGATTACTTCGACTCAGGATATACTAGAAAATTCTGCTCAGTTTTACAAAAATTTATACACTGCCGAGAACCCTGATCTTGCAGCTCAAGAATTTCTTCTTTCGCAAATCGAAAATCGTCTATCGCCCGGAGACTCTTTAGAGATTAAACTTGATTTACAATCATGTTACGATGCTCTGTCCTCAATGAAGAGTCAAAAATCGCCGGGCTCTGATGgccttccttcagaattttataaaactttcttGCCAATACTTGGCTCCGATCTTGTTGATGTTCTCAATTACTCTCTTTACTCTGGCTTGCTCCCCGAGTCCATGAGACTTGCTTTGATATCCCTTTTGATCAAAAAAGGAGACAAACTGGACCTCAAAAATTGGCGTCCGATATCTCTCcttaatgttgattataaaattggcACTAAAGCCCTTGCAAACCGCCTTAAAACTGTTCTTCCTTCTATACTGAACGAGGACCAAACCTGTTGCGTCCCTGGAAGAACTATCTTTGATAACCTTTTTCTAGTTAGAGACTCAATCTCTTACGCcgaacaaaagaatcttcccttagcaattatcaaagttgatcaagagaaagcttttgatTGTGTAAATTGGGATTTTCTTCACAAAATCATGATGCGTATGAATTTTGGACCGgtcttcatcagcttcatcacaACAATCTAG

Transcript

evm.model.HiC_scaffold_29.623

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P14381	Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000039 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03372 all species →	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR005135 all species →	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31635 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_29.623.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.