Detailed information of evm.model.HiC_scaffold_295.32 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_295:307623...311156
NR annotation: AFK74886.1, transcription factor Dll [Hydra vulgaris]
Species Chrysaora quinquecirrha · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P53772Homeobox protein DLL homolog OS=Branchiostoma floridae OX=7739 PE=2 SV=1
P56179Homeobox protein DLX-6 OS=Homo sapiens OX=9606 GN=DLX6 PE=1 SV=2
P70397Homeobox protein DLX-6 OS=Mus musculus OX=10090 GN=Dlx6 PE=2 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006634 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00046
all species →		HomeodomainHomeodomainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001356
all species →		DomainHomeobox domainInterproscan
IPR000047
all species →		Conserved_siteHelix-turn-helix motifInterproscan
IPR020479
all species →		DomainHomeobox domain, metazoaInterproscan
IPR050460
all species →		FamilyDistal-less homeobox transcription factorsInterproscan
IPR017970
all species →		Conserved_siteHomeobox, conserved siteInterproscan
IPR009057
all species →		Homologous_superfamilyHomeobox-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24327
all species →		HOMEOBOX PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0000978
all species →		Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981
all species →		Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0009790
all species →		Biological Processembryo developmentInterproscan
GO:0030154
all species →		Biological Processcell differentiationInterproscan
GO:0006355
all species →		Biological Processregulation of DNA-templated transcriptionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.HiC_scaffold_295.32.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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