Detailed information of evm.model.HiC_scaffold_3.15 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_3:172441...175216
NR annotation: XP_047139630.1, tRNA-specific adenosine deaminase 1 isoform X2 [Hydra vulgaris]
Species Chrysaora quinquecirrha · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9BUB4tRNA-specific adenosine deaminase 1 OS=Homo sapiens OX=9606 GN=ADAT1 PE=1 SV=1
Q4R7N3tRNA-specific adenosine deaminase 1 OS=Macaca fascicularis OX=9541 GN=ADAT1 PE=2 SV=1
Q9JHI2tRNA-specific adenosine deaminase 1 OS=Mus musculus OX=10090 GN=Adat1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005152 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02137
all species →		A_deaminAdenosine-deaminase (editase) domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002466
all species →		DomainAdenosine deaminase/editaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46516
all species →		TRNA-SPECIFIC ADENOSINE DEAMINASE 1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0008033
all species →		Biological ProcesstRNA processingInterproscan
GO:0008251
all species →		Molecular FunctiontRNA-specific adenosine deaminase activityInterproscan
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0004000
all species →		Molecular Functionadenosine deaminase activityInterproscan
GO:0006396
all species →		Biological ProcessRNA processingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.HiC_scaffold_3.15.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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