Detailed information of evm.model.HiC_scaffold_3.29 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_3:376582...379980
NR annotation: XP_052776537.1, protein HGV2-like isoform X3 [Mya arenaria]
Species Chrysaora quinquecirrha · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q02508Protein HGV2 OS=Halocynthia roretzi OX=7729 GN=HGV2 PE=2 SV=1
Q66HD3Nuclear autoantigenic sperm protein OS=Rattus norvegicus OX=10116 GN=Nasp PE=1 SV=1
P49321Nuclear autoantigenic sperm protein OS=Homo sapiens OX=9606 GN=NASP PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003880 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13424
all species →		TPR_12Tetratricopeptide repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011990
all species →		Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR051730
all species →		FamilyNuclear Autoantigenic Sperm-associated ProteinInterproscan
IPR019734
all species →		RepeatTetratricopeptide repeatInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15081
all species →		NUCLEAR AUTOANTIGENIC SPERM PROTEIN NASP -RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0005654
all species →		Cellular ComponentnucleoplasmInterproscan
GO:0006335
all species →		Biological ProcessDNA replication-dependent chromatin assemblyInterproscan
GO:0034080
all species →		Biological ProcessCENP-A containing chromatin assemblyInterproscan
GO:0042393
all species →		Molecular Functionhistone bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.HiC_scaffold_3.29.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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