Gene detail

Detailed information of evm.model.HiC_scaffold_3.31 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_3:395628...404512
NR annotation: XP_020624779.1, probable ATP-dependent RNA helicase DDX4 [Orbicella faveolata]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_3.31

ATGAGTGAAGACTGGGATGATGGAGATAAAAAAGCAAGCAACGTTGTTCAATTTCGGGTTTTCAAGACAACATCTCACCGAGGAGAGTCCTATGATTTAGGTGCCTCGTCACAAGGTCCTTCGTTCGTTGAAGATGCGAATGTCAGTTTGTATCGATGTCAACCATGTGGCAAGCATTTTAAGTCTAAAGCTGGATTGAAAATGCATGAAACGTGGTGTACAGTGGGGAAAAAAGACACCAGCGTAAGCTCTGAGGCAAAATTTCCAGCAGAAGATAGTAAAGATGTTATAGAGGTGGACAGTATTGAGGGTCAAGTTTCAATAACAGTTCGGGATTTGGTGTATAAATGCGTATCAGCAACAGAGAAGGAAATTGAGAAGAATAATCAAGAAAACGacgaaaaggaaaagaaagatgGTCGTAAAGGAGCAGAAAAAAGGCGCTCATATACCATCCAGTTTAAGTCAATGGTAGCTAATGAAGCAAAGCACAATCCAATAAGTGATGTTGCGTTAAAATACGGCATTGATAAATCAATGGAATTCACAAACGCCAGATCAAAGGGACTGAAGGTATCTTATGCCTGGCTTTACATACGTGCAAAGAAGATAATCCAGCAAGTCAGTCCTTCAAATCTCAACAAATTCCCAAAAGGTGCGATCAATATCTTCATAAGAAAGTACAGGATTAAACTCAGGAGAGTCCAACGCAAGAAGCAAATGGACAAAACAAGCTATTTACCCAGTATTCTGTGCTGGCACACAACATTGCTTGAAGGACTTATAAAGACAGGAAGTTCGAAACCTTCATATGATACGAAATGGGGGCGATACCGACCGAGTCGGCGGTTTAATCTGGATCAAGTGCCTATGCCATTCGCAGTTGACCGAAAAACTACATATGAAGCCTATATTTCCAAAGAGGAGCAAAGAGCTCACAGAACCTGGGTCAGCAACCCTGGACCAGGTCTGGAGAAAAGGCAATGCACTTTGCAGGTGTGCTTTTCACCCGAAGGACCACCTGTCAGAATTGCCATAATTTTTCGTGGGAAAGGGAAAAGGATATCTGCAGATGAAAAAAGAGCCTACCACAAGGATGTGGATGTCTATTGGCAGGCAAATGCCTGGGCTGATACAGAATTCAGTGTAAAATGGGTGGAGCAGACCCTCAAACCAGCCGTCAAAGACAGCGAAAATAGcgaatttttgttgttttgcgATAATCTAAGTGCTCAGACAGATGCATTATTTCTCAGTAAAGTGAAGGCATTAAATGGAATCGTTTGGTTTGGTGTGCCAGGTGCAACTGATATTTGGCAGCCTGTTGACTGTGGTTTTGGCAATATGCTAAAATCCATGGTAAGAACGGTGCAAGATGAATGGTTAGAAGATGACAGTAACATAGATCTATGGTTGGGAAACTCAGACCAGAAACTTGATGTGAAGCAAAGAAGGATTCTCATCACACACTGGGTCGGTGAAGCCTACAGTCGCTTGTTCGGAGAGCAGTATGCAGGCTCCCGACGGCGTTTCTTCGAAAAGACAGGCTGTCTTATAACTGCAGATGGTTTTGAAGACGAGAAAATTCAACCAGAAGGGCTACATTGGTATTCATTACCACCACCCTTACCGATGAATTCATCAGAAGAGCCTATGCAATGTCAACTTCCGGAACCAAGGCCAGCTCCTGAAGATGCTGAGGAATCAGAAGACAGTCTGCAGAGCGAGACCGAGGTTGAAGAGGAAAGAATTGATGAAGAGAATGATAGGGTTCTCCAGGATGAGCATGGGATGGGTGGATCTTCTACCACTTTCAATGGAACATCCAATGGTTTTGGTGGTGGCATAACGGGAGGAAGAGATGCAGATGATGCAGGCActggtggtggtggttttgGTGGAGGTGGTTTTGGTGGAGGTGGGGGTGGTTTtggtggaggtggtggtggctttggtggaggtggtggtggttttGGTGGAGGTGGAAGTGGTTCTGGTGGAGGTGGTTTTGGTGGAGGTGGTTTTGGTGGAGGTGGAGGGGGTGGAAGTTTTGGTGGGGGTAAAGCTTCAAGTGGATCTGGTTGCAGAAAATGTGGCGAAGAAGGTCACTTTGCCAGAGAATGCCCCAATAAAGGACCTGATACATGCAGAAAGTGTGGAGAAACGGGGCACTTTGCAAGAGACTGTCCAAGCTCTGGTGGAGGTGGTGGAGGTGGCAGTGGGTGCAGAAAGTGTGGTGAGGATGGGCATTTTGCAAGGGATTGCCCTAATAAGGGACCTGATACATGCAGAAAATGTGGGGAAAGTGGTCACTATGCAAGAGATTGTACAAGTTCAAATGGTACTGGGAGTGGAGGATTTGGAGGTGGTTTTGGAGGGGGTAGTGGAGGTGGTTTTGGAGGGGGTAGTGGAGGTGGTTTTGGAGGGGGAAGTGGAGGTGGTTTTGGAGGAGGCAGTAGTGGAGGTGGTTTTGGTGGAAATAGTGAAGGAGGTGAAAAGTCTGGAGGCTCTGGATGCCGTAAATGTGGAGAGGAGGGTCACTTTGCCAGAGACTGTCCAAACAAAGGCACTGAGACATGTAGAAAATGTGGAGAAGTTGGCCACTTTGCAAGAGAATGCCCAAATGCTGGAGAAGAgggtggtgaagaaaaacctgcaCCTGTCACTTATGTACCTCCAGAACcatcagaagaagaaaaggatgtTTTCAGAACGATTGCACAAGGTATAAATTTTGACAAGTATGATGAGATACCTGTGGAGGTCACTGGGCATGGACAAATGCCAAAGCCAATCAAGACATTTGAAGAAGCAAATATATATGAAGCTTTTTTAGAGAATGTAAAGAGGGCAAATTATGTGAAACCCACACCAGTTCAGAAGTATGCGATTCCTATTGTGTTGGCAGAGAGAGATCTAATGGCCTGTGCCCAAACTGGATCTGGCAAGACAGCCGCATTCTTATTGCCAGTTCTTACTAAAATGATGAACGATGGTCTTTCTGGCAGCAAGTTCAGTGAAATTCAGGCACCAGCTGCACTAATAATTTCCCCAACTCGAGAATTAACGTCTCAGATATACATGGAAGCAAGAAAGTTTTCACATCAGACGTCTTTAAGGCCGGTTGTTTGCTATGGTGGTGTCTCTGTGGCTCATCAGGCAAGACAGATTGAAAATGGATGTCACATGTTAGTTGCTACACCAGGAAGATTGAAAGACTTTGCAGAAAGGAAGAAGATCAGTCTACAGAGTGTGAAATATCTAATATTGGATGAGGCTGATCGAATGCTTGATATGGGATTTATGCCAGCTATCAAATCAATCATTGGTGACTTTGGAATGCCAGACAAAGAGAACAGACAAACTTTAATGTTTAGCGCTACATTCCCTGAAGAGATCCAAAATCTAGCTGCAGAGTTCTTGAATGATTATGTATTCTTAACAATTGGTAAGGTTGGAGGAACAAGCTCAAACATTGAACAGGTTATTGAGGATATTCCTGATTCTGAAAAAAGAGACAGGACTTGTAGAGATTCTAAGTAG

Transcript

evm.model.HiC_scaffold_3.31

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q91372	Probable ATP-dependent RNA helicase DDX4 OS=Xenopus laevis OX=8355 GN=ddx4 PE=2 SV=1
Q9NQI0	Probable ATP-dependent RNA helicase DDX4 OS=Homo sapiens OX=9606 GN=DDX4 PE=1 SV=2
Q6GWX0	Probable ATP-dependent RNA helicase DDX4 OS=Sus scrofa OX=9823 GN=DDX4 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000394 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF03184 all species →	DDE_1	DDE superfamily endonuclease	Family	Interproscan
PF00098 all species →	zf-CCHC	Zinc knuckle	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014014 all species →	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR000629 all species →	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR004875 all species →	Domain	DDE superfamily endonuclease domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47958 all species →	ATP-DEPENDENT RNA HELICASE DBP3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0007276 all species →	Biological Process	gamete generation	Interproscan
GO:0030154 all species →	Biological Process	cell differentiation	Interproscan
GO:0043186 all species →	Cellular Component	P granule	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_3.31.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.