Detailed information of evm.model.HiC_scaffold_3.32 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_3:405176...407755
NR annotation: CAB4033913.1, probable ATP-dependent RNA helicase DDX4 [Paramuricea clavata]
Species Chrysaora quinquecirrha · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q3MSQ8Probable ATP-dependent RNA helicase DDX4 OS=Pelophylax lessonae OX=45623 GN=ddx4 PE=2 SV=1
Q5W5U4Probable ATP-dependent RNA helicase DDX4 OS=Bos taurus OX=9913 GN=DDX4 PE=2 SV=1
Q4R5S7Probable ATP-dependent RNA helicase DDX4 OS=Macaca fascicularis OX=9541 GN=DDX4 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000960 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00271
all species →		Helicase_CHelicase conserved C-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001650
all species →		DomainHelicase, C-terminal domain-likeInterproscan
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47958
all species →		ATP-DEPENDENT RNA HELICASE DBP3Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0003724
all species →		Molecular FunctionRNA helicase activityInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0007276
all species →		Biological Processgamete generationInterproscan
GO:0030154
all species →		Biological Processcell differentiationInterproscan
GO:0043186
all species →		Cellular ComponentP granuleInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.HiC_scaffold_3.32.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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