Detailed information of evm.model.HiC_scaffold_3.34 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_3:439589...453280
NR annotation: XP_002116133.1, hypothetical protein TRIADDRAFT_30248, partial [Trichoplax adhaerens]
Species abbreviation CQUIN · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q7YR40Mediator of DNA damage checkpoint protein 1 OS=Pan troglodytes OX=9598 GN=MDC1 PE=3 SV=1
Q767L8Mediator of DNA damage checkpoint protein 1 OS=Sus scrofa OX=9823 GN=MDC1 PE=3 SV=1
Q14676Mediator of DNA damage checkpoint protein 1 OS=Homo sapiens OX=9606 GN=MDC1 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001384 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16770
all species →		RTT107_BRCT_5Regulator of Ty1 transposition protein 107 BRCT domainDomainInterproscan
PF16589
all species →		BRCT_2BRCT domain, a BRCA1 C-terminus domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001357
all species →		DomainBRCT domainInterproscan
IPR036420
all species →		Homologous_superfamilyBRCT domain superfamilyInterproscan
IPR051579
all species →		FamilyDNA Damage Response and Transcriptional RegulatorInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23196
all species →		PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEINInterproscan

 Gene Ontology
No Gene Ontology signature was detected for evm.model.HiC_scaffold_3.34. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.HiC_scaffold_3.34.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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