Gene detail

Detailed information of evm.model.HiC_scaffold_31.282 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_31:3624100...3639107
NR annotation: XP_047123611.1, phosphatidylinositol 3-kinase regulatory subunit alpha [Hydra vulgaris]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_31.282

atggCATCTTCGTTGAATGGAAATGTCGGAATTGTTACATTTGTGGCTGAATTTGATTATATTCCACAAGTAGAAGGAGAAATTGAATTGCATAAAGGAGATCTCTGCGTTGTTGCGAAACCAATAATCGACCCATGTGGATGGCTGGAAGGAACTAATAAGAATTCAAATGAATATGGACAATTTCAGGAACTTATGTCACTGTCGTTGAAGATTTTACACCACCCCCACCACCAAGACCACCTAAACCAACACCCCTTGGCCCTCCTGCTGAGACAAATCTGGAAAAACAAGCCTATAGAACACTGGGAGAATACAGATGTTTTAGAATGGATTGCAGCAGTAAGAGCATATCAgtacattcattcattcaaagaCAAGAGCATAACAGGAGCAATGCTTTATAATATTGATGAAGCTTATTTAAAGAAGACTCTTGCTGTCCCTCACGACTTTGATGTTCGATCACTCTCGAATACCATTAAAGAACTTATTCAAGGAACTGATATGATCGGATCAAGTAACACATTGCTTCCACGTGTTCCTGTTCCAGATGAGAATTTCGCTGACTCAGCAAGAGCTGCAATAAACAGCCACGAATTACAAGAACACACGTTCACAACAATGCAAGGTTGTGATGTATGCAGAAAATGCATGTTTGGCCTCGTTCGTCAAGGACTTATTTGCAACGCTTGTGGAATACAGTGTCATCGAAAGTGTGCTCAATATGGATTGACAGTTTGCAAGCAGAAATATTACAGAGCAAGACGATCAAGCGATGCTAAAGATCCTTCGTTTGGCGCAGAGTTGAATGATTCATCAACAGGTGTTCCAGTTTGTATCAAGAAACTTGTAAATACCATTGATAAAAAAGGTCATAACATCAAAGATTTATATCTCAATGCTGTTCCATTTCTTGAACTATTATCAATGAGAAATGCTTTGAATCAAGCTCCAGACGGCGTTAATATGATGGACAGTGATTGGAGAGATCCTAATATTGCTGCGTCAGCATTAAAACAGTATCTTTTAGAAATGACGTCATCTATTATTACGCCTGAAAAGTATGAAGATTTTATCATTGCAGCAAaaCTAAGTCAAACATCAGTAAACATTGATCAACAACCAATCATGAGACAGGTCAGAGAGTTGCCAGAAAGAAACAGAATTGTACTCGAATATTTGCAATCTCATCTAATGAGAGTTTGCAACTTTGAAGATGGATTAAGTCTTGAAAGAATATGTAAAGTATTTGGTGTTTTGCTATTGCGTCCATTTGACAGTGAAGTGAGGAAATTCATCAAGAATCTAGATCACCAAAGTAGAGTTATAGAACTTCTTCTAAGCGAAAGAATTAAACCGATTACACCATCTATTCCAGCTCGACAACCAACTTTGAGAAAGTCCTCCATGGACGCCCAAGGCACTCAAAGACTCGAGTCTGCAGAATGGTATTGGGGTTCGATAACAAGAGAGACAGCATCTGAGAAACTAAAAGACACTTCAGAGGGAACATTTCTTATAAGAGACTCACAAGTGAAAGGAGAGTACACCTTAACTCTAAGaAAAGATGGGGGAAATAAACTGATCAAAATTTACCAGAAAGATGGACATTATGGATTCACAGATTCAAGCGCATTTCCATCGCTTTTTGCTTTGGTCGACCATTTTTCAAATCATTCTTTAAAAGAATATAATTCAAATTTGGATATCAAACTTTTATATCCTGTTTCAAAATATGAGAACCTATCAGATATACCATTACATCAAGTGGAACAAGAGTTGCAAGAAGTATCTGCTAAAATGGGGCAATACACAATGCTcgaaaataaattaaatgaaGCTTCACAGGAAGTTGAAGATGCTAAAGAAATGCTACAAGCACAAACAGAAGTTGTTTATTTGGTAGAAGAACATATAAATCTTGCGAGTGGTTATCGGGGTGAAGTTGCCCCCAATGACAGGGCTGTGCTCCAGGAAACGATAGCCAGAATGAATAAGAGGCTGGAGAATGAgaaaaaagctttgaaagaAGTTGATGATTTATTTAGAAAGAAAAACGAAGAATATTGTGTAATGGAAAAATATCTTAATGATATGAAATATGATATGCCAGAGATCAAACAGAAATACAATGAATTACAAAGAAAACTGAAAGATTCTAATCCAGACAGAGAGAAATATTTCAGTGAACAAGAAGAGGAAGGAATATATGATCAATTACCCGCGATGACGTATCAAAAAGAACGTGATGAGCTTCCACAAGAATCATGGATGATGGGAAAAGTTAAAAGGGAAACAGTTCGAATGATGTTAAATGGGAAACCAGATGGGACATTTTTTGTCAGAGAAAGTGAGAAGAGAAGACATGAGCATGTTATTTCACTTGTTCATGACCAATCTATCAAGCATATCACAATCGAGAAAGGACCAAATGGATATGGTTTTGCTGAACCTTATAATATCTATCCTGATTTTACATCATTAATTCATCATTATCACAAACAATCATTAAGAATGCACAATCCTAAATTAGATGTTACATTGATGTTTCCAATTCgttattttgatgatgatgataacataTATATGCAATGTAGTGAATAG

Transcript

evm.model.HiC_scaffold_31.282

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5R685	Phosphatidylinositol 3-kinase regulatory subunit alpha OS=Pongo abelii OX=9601 GN=PIK3R1 PE=2 SV=1
P27986	Phosphatidylinositol 3-kinase regulatory subunit alpha OS=Homo sapiens OX=9606 GN=PIK3R1 PE=1 SV=2
P23727	Phosphatidylinositol 3-kinase regulatory subunit alpha OS=Bos taurus OX=9913 GN=PIK3R1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003700 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00130 all species →	C1_1	Phorbol esters/diacylglycerol binding domain (C1 domain)	Domain	Interproscan
PF00017 all species →	SH2	SH2 domain	Domain	Interproscan
PF16454 all species →	PI3K_P85_iSH2	Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain	Domain	Interproscan
PF00620 all species →	RhoGAP	RhoGAP domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR036860 all species →	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR000980 all species →	Domain	SH2 domain	Interproscan
IPR002219 all species →	Domain	Protein kinase C-like, phorbol ester/diacylglycerol-binding domain	Interproscan
IPR000198 all species →	Domain	Rho GTPase-activating protein domain	Interproscan
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR008936 all species →	Homologous_superfamily	Rho GTPase activation protein	Interproscan
IPR032498 all species →	Domain	PI3K regulatory subunit p85-related , inter-SH2 domain	Interproscan
IPR046349 all species →	Homologous_superfamily	C1-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10155 all species →	PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005942 all species →	Cellular Component	phosphatidylinositol 3-kinase complex	Interproscan
GO:0046854 all species →	Biological Process	phosphatidylinositol phosphate biosynthetic process	Interproscan
GO:0046935 all species →	Molecular Function	1-phosphatidylinositol-3-kinase regulator activity	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_31.282.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.