Gene detail

Detailed information of evm.model.HiC_scaffold_31.521 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_31:6423991...6453464
NR annotation: XP_031566645.1, nuclear pore complex protein Nup155-like [Actinia tenebrosa]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_31.521

ATGTCTATGTCAGGCGTTTATGTGTTGGATTTGAAAGGGAAGAATTTGATATCAAGAAATTACAGAGGTGATATTGATGTTGGAATTATTGAGAAATTCCTTCCCCTTGTACttgaaagagaagaagaggaGTCAGTCTCACCAATCATTGTGCATGGAGATGTCACTTTTGTTTACATCAAAAACAACAATCTGTATATTgttgcaacaacaaaaacaaatgcaaatgttgctttgatttttgttttccTGCATAAATTGGTTCAAGTATTTACAGATTACTTTAGAGAGCTGGAAGAAGAAAGCATTCGTgataattttgttcttatttatGAACTTATGGATGAGTTAATGGATTTTGGATATCCTCAAAGCACAGAAACAAAAATTCTTCAAGAATACATCACACAACAAGGTCACAAGTTAGAGCTGGCTCCAAAACCACCTCCAGCACTCACAAATGCAGTTTCCTGGAGATCAGATTCAGTGAAATATCGCAAGAATGAAGTTTTCCTCGATGTTATCGAATCTGTTAATTTACTAGCTGGTGTTTctggaaatgttttgaaaagtgAAATAGTTGGCTCTGTAAAGATGAAATGTTATCTATCTGGAATGCCTGAACTTAGACTTGGCTTGAACGACAAAGTTCTTTTCGAGAACACTGGAAGATCAAAGAGCAAAGCCGTTGAGCTTGAAGACGTCAAATTTCACCAGTGCGTTCGTTTGTCGCGATTTGAAAACGACCGCACGATATCTTTCATTCCACCGGACGGTGAATTTGAGTTAATGGGTTATCGACTGAGTACTCATGTAAAACCATTGATATGGATTGAATCCGTGATCGAAAGACATCCTCACAGCAGAGTAGAGTACATGATTAAGGCTAAAAGTCAGTTCAAGAAGCGATCAACTGCAAATAATGTAGAAATTGTTATTCCTGTTCCTGAAGATGCTGATTGTCCAAAATTTAAGACAACCATTGGTAATGTCAAGTATGCGCCAGAGCAAGCATCTGTAATCTGGACAATCAAGTCATTCCAGGGTGGCAAGGAATATCTAATGCGAGCCCATTTTGGCCTTCCAAGTGTCATATCAGAGGAAACAGAAGGACGCCCTCCAATATCAGTCAAGTTTGAAATACCATATTTTACTGTATCGGGAATTCAGGTACGATATCTGAAAATCATTGAGAAAAGTGGATATCAAGCTCTGCCGTGGGTGAGATACATAACTCAAAATGGAGATTGCATTATGCCTGTTGCAATTGGTTCTTTACCGCAGAAAATCAGCAGCCCGGCTGCTTCATTGAATGTTGCAGCAGAAGAGCTCGATAATCAGTTACAAAGTGATCGGCAGCTCGTCGATCTCGGTGCTCAGTTAGGTGTTACAGGAAATGGTTTTGCAACATTCAGTGGAATCAATGACTTTGACTACCCAAATATATTTGGATTACAGCATCATCAGCATGCAGGGTCTCCTGGAACTTTACTAAGTTCTGTAAAGAGAGTTCCAATACCTGAAGAACTTTTTGAACAGTTTGAACATGTGCAAGCTAACGTCACTATGGGTTTATTTGCTGAGATCAGTAGAGCTTGGCTTGCTATAGACAGTGACATTTATGTATGGAATTTCGAAGATGGGAGTGATGTTGCATATTTTGATGGCCTTGATGAAGTCATCTTAGCAGCAGGTCTTATCTCTCCAAAACCAGATGTTTTCCAGGATCACATAAAGTTCTTACTCTGTATCACGACACCATTCAATATTGTTGTTCTTGGAGTCGGATTTGCAGAAGAAAACGATGGTCGAATGTACAGAGAAATGCATTTGCAGCCTCAACCTTTGTTTACTGTCCCAACTGATAGCATCTTCATGACGTCAGTGACTGGTACATGGAATGGACGGATATTTCTCAGTGGTGGTGATGGATGCCTTTATGAAATCACTTATCAGGCCCAGAACAGTTGGTTTAGACAACGCTGCAAAAAGATCAATCATTCAACAAGTTGGGCTTCGATGTTGGTGCCTTCATTTGTTAGCAAGGCATTCTCTGCCGAAGACCCAATCTGTCAGATTGCCGTGGATAACATTCGTCAAGTTTTGTACGGAAGAACTGAAAGAGGATGCATCCAAgtTTATGATTTGGGTGAAAATGGTTTGGACATGCGTTTTGCTGCAGCATTGGATTCGAACACGATTGCAGTTGCTGCCTCTCATGCCGCAAGGTGGGGTAAAATACCTAAAATCTTTACAACAATTAATTATAGAAGTGCACGGCTATATTTTGCGACTACATCACTGGCAGGAGCTGACAGTCGTCCTTCAATGCTTCGCCTATCACACGTTCGCATGCCCCCAGGATTCACTCCCTCTGGTTCTGCAGGAAAACCGACGAAAGTGCATCATTCGTTTTATAGACAAGgCACGATCTTGATGGTTGAAAGTGCATCTGATGATATGGACACCCTGTGGTGTTTGAGTCAAGAATCTTTCCCATTTCAAGCGACAATGAAAGAGAGGATCGAAGGCAAGACATGGTGCGTCACTGAGATTCCAGAATACAGTGAAACAAATCATGTCCCAAGCATTTTCTACCACTGTTTATGGCCAGAACCTCCGGCTGTTGTCAACCAGCATGTCTTTCCACAAAGAAGATTTGTATTGCTCAGTCCTAAAGGCAGTCACATAATCAGCACTCTTAGGCCCGTTGAACAACTTCGTCAGCTTCTCCTCGCAAGTGCCAGCGGGGAATCGGAAGCCATCGAGACTTTCTTCAAATTCTTCGGGgCAACACAATCATGTGCAATGtgccttattttgatttgtcaaaGCCCAGAGATGGAAAAGGAGGTCGTAAGCTTCGCCGTTCATGCATTTTTCCGCTATGACAACCAACGTGCTACAAATACGGCATCGGGTGCTACAACTATTCAGCAGGCAACAGATGCCAGTCCGAAAATTCCGGATGCAAGTTTCATTTTCTCTGGTCCGGCACTTGGAGGCAGCAGTCATGGCAGTTATCTTGCATCACCAATACAACAAAAGAGTCATTCAACTCCGGCTGTTCCATCAACGAGTCACACTTCGAAACAACATTCTGGAAAACACAGCGGCATCGCATTGTATCTTGCAAGAATACTAAGGCCAATTTGGAACCACCCTCTGGTCATCGAAACTTATCCTGATGGCACAAATAAACAGTTATTCAGCAGACTACCAGTTGAAGATCTCACTTGGTTTATTGAACgtttaagaaaattaagagAATTTATGGATCGTTATTCTAATATGGCAATTCTCGGTGATTTCACAGACGAGTCGCGGACCTACAATCGGAAGAGAGGTGATCACGAAGCCGAAGCACGTGAAAGAGGCTGCCTTATAAGTCTATCCAGCCTCATTCGGATGTGCTGTGAAGTGCTGGAGCTATGGAGAACTCTCACTGACAACCAAATGAATTTACTGACACTTGGCCTTCCTGAGGCAGTGAAGGAGCAGTTTCTTGGGTTCTCGTTAAAAGATTTCGTCCTAAATGGACAAGAGCTTTCAGCTGCTCTAATTGGCTGTCTAATGTCACGTTACCTTGACGACCAAGCCACTGTTGATGCCATAAATGGTCATCTTAGAGAGATTTGTCCAACGCTATTTTCTGCTGACGATGCAATTTATTCAAAGGCGAACGAAATGGTgcattttgcaaaacatgttcAGGATAAAACAGAGAAGAGCAAACTTCTTACTGAAGCGATTAAGATGTTCTTCAGAGTTCCAGAACTGCTGGATCTACCTTGGATTTGCAAACAGCTCGAGGAAGCAAAATATTATGATGGCATTGTCGAACTGTCGTTGTACGTTGCTTCAAAACGTGACTCAAAAGGCATCTCACTTCATTTCTATCATTCTGGCGAGCCAAGAGAAGATACACAGGGATATGAAGCTACTATTTTACGGCGAGAGTCATATAAATGCATCCTTGATGCTCTGGAAAACCTGTACGTCAAATGCACTGAGCGTCATCATACACATCCAACAGATCCTGGTCCACCTTCACCAGTAGACCCAAATGCTTTGACTACGGAGCAAGCTGAAATAATGtTGGAACAGACGATCAAAACATGTTTACGAAGTGACGACGAGTTGTTTCACGTAGCACTCTACGATTGGATGATGGCTAAGGATATGACAGAAAGACTACTAGAGGTAACTTCACCATATGTCGAACACTACATGATCAGAACTGCATCCGAAAAGCATCCGAATGACATACCAATGCTCGACCTGCTCTGGAAACATCACCAAAAGCGAAAAAATTATCTTTCTGCATCAAAAGTACTCATTGGCCTAGCTGAAAGGGAAAGCGATTCTCTGACGATACAAGAGCGAATAGCGTATATCTCACGTGCCATCATGTGTGCCAAGAATGCCAGCTTGACGACTAATGCAAGTGCCGATGGGGAATTCTTACATGAGTTGGAAGAGAAACTTGAGGTCGCACGAATACAGTTCCAGGTGCACGAAGCTTTGACACGCATCAGTGTCAGTAGAAGTCTGATGCAAGATAAATCAGATGCACTCAATATACTTGACGCTAAACTTATTGATATATCACAGCTATATGGTGACTTTGCTGATCGTTTTGACCTTCTTGAatgcaaattgcaaattttaCATTGCGCTGGATATCAAGATCAGGCCTTGATTGAAAACATTTGGAAAGAAATCATCCAAAAAGCTCTACGTGCTGATGGCAGGATGACGTCAGTTGGCCAAACTGTAATCGCAACTGGAAAGACTTATATTAATAGTCATGGCTTCTTTCCGATGGATTTCCTATTGTTCTACTTGGAGAAAGTTTCATGCGAAAACAATTGGGATCCAACCTGGGTCTTCGTTTCATTCAAAGAGATTGGAGTGCCATTGAAAGAGATATGGATTTCATATGACAGACTTTTCAAATCAAAGGATACTACATGGCAAACACTTGGAAAGCCATTACATTTATTGAATGTAATATCACTATTCATAAGATCATATTTAGAAAATACAAACTTGGTTCCTTTGAATGATCGagCTGCATTTAGCCGGACCCTTTGCGAGGCTTGCTCAAGCTATTTGGTGGAACTGGAATCAATGAACGAAAGTGAAGCGCTTGTCAAAAGTCTACTTTCGAGGTTCAGAACAGTACGGGCAGAACTGAAACGAGAATTCTAA

Transcript

evm.model.HiC_scaffold_31.521

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O75694	Nuclear pore complex protein Nup155 OS=Homo sapiens OX=9606 GN=NUP155 PE=1 SV=1
Q99P88	Nuclear pore complex protein Nup155 OS=Mus musculus OX=10090 GN=Nup155 PE=1 SV=1
P37199	Nuclear pore complex protein Nup155 OS=Rattus norvegicus OX=10116 GN=Nup155 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004512 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00928 all species →	Adap_comp_sub	Adaptor complexes medium subunit family	Family	Interproscan
PF03177 all species →	Nucleoporin_C	Non-repetitive/WGA-negative nucleoporin C-terminal	Family	Interproscan
PF01217 all species →	Clat_adaptor_s	Clathrin adaptor complex small chain	Domain	Interproscan
PF08801 all species →	Nucleoporin_N	Nup133 N terminal like	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042538 all species →	Homologous_superfamily	Nucleoporin, Nup155-like, C-terminal, subdomain 3	Interproscan
IPR011012 all species →	Homologous_superfamily	Longin-like domain superfamily	Interproscan
IPR028565 all species →	Domain	Mu homology domain	Interproscan
IPR004870 all species →	Family	Nucleoporin, Nup155-like	Interproscan
IPR007187 all species →	Domain	Nucleoporin, Nup133/Nup155-like, C-terminal	Interproscan
IPR022775 all species →	Domain	AP complex, mu/sigma subunit	Interproscan
IPR036168 all species →	Homologous_superfamily	AP-2 complex subunit mu, C-terminal superfamily	Interproscan
IPR042533 all species →	Homologous_superfamily	Nucleoporin, Nup155-like, C-terminal, subdomain 1	Interproscan
IPR001392 all species →	Family	Clathrin adaptor, mu subunit	Interproscan
IPR014908 all species →	Domain	Nucleoporin, Nup133/Nup155-like, N-terminal	Interproscan
IPR018240 all species →	Conserved_site	Clathrin adaptor, mu subunit, conserved site	Interproscan
IPR042537 all species →	Homologous_superfamily	Nucleoporin, Nup155-like, C-terminal, subdomain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10350 all species →	NUCLEAR PORE COMPLEX PROTEIN NUP155	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000972 all species →	Biological Process	transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery	Interproscan
GO:0005643 all species →	Cellular Component	nuclear pore	Interproscan
GO:0006405 all species →	Biological Process	RNA export from nucleus	Interproscan
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan
GO:0006913 all species →	Biological Process	nucleocytoplasmic transport	Interproscan
GO:0017056 all species →	Molecular Function	structural constituent of nuclear pore	Interproscan
GO:0036228 all species →	Biological Process	protein localization to nuclear inner membrane	Interproscan
GO:0044611 all species →	Cellular Component	nuclear pore inner ring	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0030131 all species →	Cellular Component	clathrin adaptor complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14312	NUP155, NUP170, NUP157; nuclear pore complex protein Nup155	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.