Gene detail

Detailed information of evm.model.HiC_scaffold_31.705 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_31:8382522...8388137
NR annotation: XP_029189491.2, hydroxysteroid dehydrogenase-like protein 2 [Acropora millepora]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P5L8	Hydroxysteroid dehydrogenase-like protein 2 OS=Danio rerio OX=7955 GN=hsdl2 PE=2 SV=1
A4FUZ6	Hydroxysteroid dehydrogenase-like protein 2 OS=Bos taurus OX=9913 GN=HSDL2 PE=2 SV=1
Q66KC4	Hydroxysteroid dehydrogenase-like protein 2 OS=Xenopus tropicalis OX=8364 GN=hsdl2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002538 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02036 all species →	SCP2	SCP-2 sterol transfer family	Domain	Interproscan
PF00106 all species →	adh_short	short chain dehydrogenase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003033 all species →	Domain	SCP2 sterol-binding domain	Interproscan
IPR002347 all species →	Family	Short-chain dehydrogenase/reductase SDR	Interproscan
IPR036527 all species →	Homologous_superfamily	SCP2 sterol-binding domain superfamily	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR051935 all species →	Family	Hydroxysteroid dehydrogenase-like protein 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42808 all species →	HYDROXYSTEROID DEHYDROGENASE-LIKE PROTEIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11153	RDH12; retinol dehydrogenase 12	EC:1.1.1.300	Retinol metabolism	ko00830	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.