Gene detail

Detailed information of evm.model.HiC_scaffold_31.72 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_31:1190034...1204193
NR annotation: XP_031575124.1, phytanoyl-CoA dioxygenase, peroxisomal-like [Actinia tenebrosa]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P57093	Phytanoyl-CoA dioxygenase, peroxisomal OS=Rattus norvegicus OX=10116 GN=Phyh PE=1 SV=2
O35386	Phytanoyl-CoA dioxygenase, peroxisomal OS=Mus musculus OX=10090 GN=Phyh PE=1 SV=1
O14832	Phytanoyl-CoA dioxygenase, peroxisomal OS=Homo sapiens OX=9606 GN=PHYH PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007446 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12937 all species →	F-box-like	F-box-like	Domain	Interproscan
PF05721 all species →	PhyH	Phytanoyl-CoA dioxygenase (PhyH)	Domain	Interproscan
PF01369 all species →	Sec7	Sec7 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000904 all species →	Domain	Sec7 domain	Interproscan
IPR001810 all species →	Domain	F-box domain	Interproscan
IPR035999 all species →	Homologous_superfamily	Sec7 domain superfamily	Interproscan
IPR023394 all species →	Homologous_superfamily	Sec7, C-terminal domain superfamily	Interproscan
IPR008775 all species →	Family	Phytanoyl-CoA dioxygenase-like	Interproscan
IPR048003 all species →	Domain	F-box only protein 8, F-box domain	Interproscan
IPR047128 all species →	Family	Phytanoyl-CoA dioxygenase	Interproscan
IPR036047 all species →	Homologous_superfamily	F-box-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21308 all species →	PHYTANOYL-COA ALPHA-HYDROXYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0032012 all species →	Biological Process	regulation of ARF protein signal transduction	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0001561 all species →	Biological Process	fatty acid alpha-oxidation	Interproscan
GO:0048244 all species →	Molecular Function	phytanoyl-CoA dioxygenase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_31.72.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.